Motif IL_29583.1 Version IL_29583.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 3-13 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_006 | 2QBG | 0.0000 | 0 | B | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | ncSW | tSH | tHS | cWw | cWW | |
| 2 | IL_1S72_001 | 1S72 | 0.1022 | 0 | Triple sheared with non-canonical cWW (H) | 0 | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | ||
| 3 | IL_3PYO_001 | 3PYO | 0.1551 | 0 | A | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | tSH | ncSW | tSH | ntHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGAUG*CUGAAAC | 2 |
| GUGGAUU*AUGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAU*UGAAA | 3 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_29583.1 | Only in the parent motif |
|---|---|---|---|
| IL_53203.1 Compare | IL_1S72_001 | IL_2QBG_006, IL_3PYO_001 | IL_2ZJR_001, IL_3F1H_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_29583.1 | Only in the child motif |
|---|---|---|---|
| IL_44067.1 Compare | IL_2QBG_006, IL_1S72_001 | IL_3PYO_001 | IL_2XZM_038, IL_2ZJR_001, IL_3U5H_016, IL_3UXR_001 |
- Annotations
-
- (2)
- Triple sheared with non-canonical cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.09 | Max 0.16
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