Motif IL_53203.1 Version IL_53203.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 3-12 | 3-13 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_001 | 1S72 | 0.0000 | 0 | Triple sheared with non-canonical cWW (H) | 0 | LSU rRNA | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | |
2 | IL_2ZJR_001 | 2ZJR | 0.1703 | 0 | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | tSH | tSH | cWw | cWW | |||
3 | IL_3F1H_001 | 3F1H | 0.2071 | 0 | A | 23S RRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | tSH | ncSW | tSH | ntHS | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGGAUG*CUGAAAC | 2 |
GUGGAUU*AUGAAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGGAU*UGAAA | 3 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_53203.1 | Only in the child motif |
---|---|---|---|
IL_29583.1 Compare | IL_1S72_001 | IL_2ZJR_001, IL_3F1H_001 | IL_2QBG_006, IL_3PYO_001 |
IL_99755.1 Compare | IL_2ZJR_001 | IL_1S72_001, IL_3F1H_001 |
- Annotations
-
- (2)
- Triple sheared with non-canonical cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.12 | Max 0.21
Coloring options: