Motif IL_30028.1 Version IL_30028.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-4 | 1-13 | 2-11 | 3-10 | 3-12 | 4-9 | 5-8 | 6-7 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_065 | 1S72 | 0 | 3 | Kink-turn related (H) | 0 | LSU rRNA | C | 1854 | G | 1855 | C | 1856 | A | 1858 | A | 1859 | U | 1860 | * | A | 1869 | C | 1870 | U | 1871 | G | 1873 | U | 1874 | A | 1875 | G | 1877 | cSs | cWW | tSs | tWW | tHH | tHH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAAU*ACUCGUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAAA*CUCGUAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_30028.1 | Only in the parent motif |
|---|---|---|---|
| IL_26781.2 Compare | IL_1S72_065 | IL_2ZJR_066, IL_3F1H_067 |
Children motifs
| Child motif | Common motif instances | Only in IL_30028.1 | Only in the child motif |
|---|---|---|---|
| IL_98591.1 Compare | IL_1S72_065 | IL_2ZJR_066, IL_2QBG_071, IL_3UXR_067 |
- Annotations
-
- Kink-turn related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: