Motif IL_30534.1 Version IL_30534.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_017 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 554 | U | 555 | * | A | 602 | A | 603 | G | 604 | C | 605 | cWW | cWW |
| 2 | IL_2AW7_015 | 2AW7 | 0.9172 | 0 | A | 16S ribosomal RNA | A | 274 | G | 275 | * | U | 249 | A | 250 | G | 251 | U | 252 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAGC | 1 |
| AG*UAGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AG | 2 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_30534.1 | Only in the parent motif |
|---|---|---|---|
| IL_96206.3 Compare | IL_1S72_017 | IL_2AW7_015 | IL_1XJR_004 |
| IL_69799.1 Compare | IL_2AW7_015 | IL_1S72_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_30534.1 | Only in the child motif |
|---|---|---|---|
| IL_86060.1 Compare | IL_2AW7_015 | IL_1S72_017 | |
| IL_26910.1 Compare | IL_1S72_017 | IL_2AW7_015 | IL_1FJG_012, IL_1XJR_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
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