Motif IL_26910.1 Version IL_26910.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-3 | 1-5 | 3-4 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_012 | 1FJG | 0.4522 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |||
| 2 | IL_1S72_017 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | A | 602 | A | 603 | C | 605 | * | G | 554 | U | 555 | cWW | cWW | |||
| 3 | IL_1XJR_004 | 1XJR | 0.6208 | 1 | 180 degree turn | A | s2m RNA | G | 28 | A | 29 | C | 31 | * | G | 19 | C | 20 | ncsS | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*AG | 1 |
| AAGC*GU | 1 |
| GAUC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG* | 2 |
| AU* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_26910.1 | Only in the parent motif |
|---|---|---|---|
| IL_30534.1 Compare | IL_1S72_017 | IL_1FJG_012, IL_1XJR_004 | IL_2AW7_015 |
| IL_62499.8 Compare | IL_1XJR_004 | IL_1FJG_012, IL_1S72_017 | IL_2AW7_057, IL_1FJG_050 |
| IL_80348.3 Compare | IL_1FJG_012 | IL_1S72_017, IL_1XJR_004 | IL_4IOA_023, IL_3U5F_020 |
Children motifs
| Child motif | Common motif instances | Only in IL_26910.1 | Only in the child motif |
|---|---|---|---|
| IL_32508.1 Compare | IL_1FJG_012, IL_1S72_017 | IL_1XJR_004 | IL_3U5F_020, IL_3J7A_017 |
| IL_62499.10 Compare | IL_1XJR_004 | IL_1FJG_012, IL_1S72_017 | IL_2AW7_057, IL_1FJG_050 |
- Annotations
-
- (2)
- 180 degree turn (1)
- Basepair signature
- cWW-cSS-L-cWW
- Heat map statistics
- Min 0.45 | Avg 0.43 | Max 0.86
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