Motif IL_96206.3 Version IL_96206.3 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-2 | 1-5 | 2-3 | 3-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_017 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | G | 554 | U | 555 | * | A | 602 | A | 603 | C | 605 | cWW | cWW | |||
| 2 | IL_1XJR_004 | 1XJR | 0.6208 | 1 | 180 degree turn | A | s2m RNA | G | 19 | C | 20 | * | G | 28 | A | 29 | C | 31 | ncsS | cWW | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAGC | 1 |
| GC*GAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AG | 1 |
| *AU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_96206.3 | Only in the parent motif |
|---|---|---|---|
| IL_96206.2 Compare | IL_1S72_017, IL_1XJR_004 | IL_1FJG_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_96206.3 | Only in the child motif |
|---|---|---|---|
| IL_30534.1 Compare | IL_1S72_017 | IL_1XJR_004 | IL_2AW7_015 |
| IL_62499.8 Compare | IL_1XJR_004 | IL_1S72_017 | IL_2AW7_057, IL_1FJG_050 |
- Annotations
-
- (1)
- 180 degree turn (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.62 | Avg 0.31 | Max 0.62
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