Motif IL_30798.1 Version IL_30798.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-4 | 2-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_050 | 1S72 | 0.6795 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW | ||
| 2 | IL_2ZJR_022 | 2ZJR | 0.6691 | 0 | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | |||
| 3 | IL_1S72_008 | 1S72 | 0.6612 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW | |
| 4 | IL_1G1X_001 | 1G1X | 0.6607 | 0 | Major groove platform; stack outside cWW | E+D | 16S RIBOSOMAL RNA | U | 751 | G | 752 | A | 753 | C | 754 | * | G | 654 | A | 655 | cWW | ncSH | tSH | cWW |
| 5 | IL_1F7Y_001 | 1F7Y | 0.6526 | 0 | B | 16S RIBOSOMAL RNA FRAGMENT | U | 50 | G | 51 | A | 52 | C | 53 | * | G | 18 | A | 19 | cWW | ncSH | tSH | cWW | |
| 6 | IL_2ZJR_062 | 2ZJR | 0.6694 | 0 | X | LSU rRNA | G | 1683 | G | 1684 | A | 1685 | A | 1686 | * | U | 1976 | C | 1977 | cWW | tSH | cWW | ||
| 7 | IL_3F1H_048 | 3F1H | 0.6769 | 0 | A | 23S RRNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | ntSH | cWW | ||
| 8 | IL_1FJG_027 | 1FJG | 0.6735 | 0 | Major groove platform; stack outside cWW (H) | A | SSU rRNA | U | 751 | G | 752 | A | 753 | C | 754 | * | G | 654 | A | 655 | cWW | ncSH | tSH | cWW |
| 9 | IL_3DIR_004 | 3DIR | 0.5645 | 0 | A | RNA (174-MER) | C | 38 | A | 39 | U | 40 | C | 41 | * | G | 54 | G | 55 | cWW | cWW | |||
| 10 | IL_1S72_061 | 1S72 | 0.6346 | 0 | 0 | LSU rRNA | G | 1744 | G | 1745 | A | 1746 | A | 1747 | * | U | 2034 | C | 2035 | cWW | tSH | cWW | ||
| 11 | IL_1NTB_003 | 1NTB | 0.5730 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | cWW | |||
| 12 | IL_3F1H_063 | 3F1H | 0.6116 | 0 | A | 23S RRNA | G | 1666 | G | 1667 | A | 1668 | A | 1669 | * | U | 1993 | C | 1994 | cWW | tSH | cWW | ||
| 13 | IL_2ZJR_046 | 2ZJR | 0.0000 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | cWW | ||
| 14 | IL_3D0U_004 | 3D0U | 0.1797 | 0 | Major groove platform; stack outside cWW | A | Lysine Riboswitch RNA | C | 35 | A | 36 | U | 37 | C | 38 | * | G | 51 | G | 52 | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUU*AC | 3 |
| UGAC*GA | 3 |
| GGAA*UC | 3 |
| CAUC*GG | 2 |
| UGUU*AG | 1 |
| CGAA*UG | 1 |
| CUUC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA* | 7 |
| GU* | 4 |
| AU* | 2 |
| UU* | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_30798.1 | Only in the child motif |
|---|---|---|---|
| IL_30798.2 Compare | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_008, IL_1S72_050, IL_3D0U_004, IL_1FJG_027, IL_1G1X_001, IL_2ZJR_062, IL_1F7Y_001, IL_1S72_061, IL_3F1H_063, IL_3F1H_048, IL_3DIR_004 | IL_1NTB_003 | |
| IL_53918.2 Compare | IL_1NTB_003 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_008, IL_1S72_050, IL_3D0U_004, IL_3F1H_063, IL_1G1X_001, IL_2ZJR_062, IL_1F7Y_001, IL_1S72_061, IL_1FJG_027, IL_3F1H_048, IL_3DIR_004 | IL_1S72_060, IL_2ZJR_061 |
- Annotations
-
- (8)
- Major groove platform; stack outside cWW (H) (4)
- Major groove platform; stack outside cWW (2)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.44 | Max 0.70
Coloring options: