Motif IL_53918.2 Version IL_53918.2 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-4 | 2-5 | 3-4 | 5-6 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_060 | 1S72 | 0.0000 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | * | G | 1743 | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW | ||
2 | IL_2ZJR_061 | 2ZJR | 0.1681 | 0 | Isolated tWW turn (H) | X | LSU rRNA | U | 1680 | A | 1681 | * | A | 1682 | U | 1978 | C | 1979 | A | 1980 | cWW | tWW | cWW | ||
3 | IL_1NTB_003 | 1NTB | 0.9352 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | U | 16 | C | 18 | * | U | 17 | G | 110 | G | 111 | C | 15 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAG*CCA | 1 |
UAA*UCA | 1 |
GG*CUUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*C | 2 |
*UU | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | Updated, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_53918.2 | Only in the parent motif |
---|---|---|---|
IL_53918.1 Compare | IL_1S72_060, IL_2ZJR_061 | IL_1NTB_003 | |
IL_30798.1 Compare | IL_1NTB_003 | IL_1S72_060, IL_2ZJR_061 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_008, IL_1S72_050, IL_3D0U_004, IL_3F1H_063, IL_1G1X_001, IL_2ZJR_062, IL_1F7Y_001, IL_1S72_061, IL_1FJG_027, IL_3F1H_048, IL_3DIR_004 |
Children motifs
Child motif | Common motif instances | Only in IL_53918.2 | Only in the child motif |
---|---|---|---|
IL_53918.3 Compare | IL_1S72_060, IL_2ZJR_061 | IL_1NTB_003 | IL_1U9S_005 |
IL_73059.1 Compare | IL_1NTB_003 | IL_1S72_060, IL_2ZJR_061 | IL_2ZJR_081, IL_1S72_078 |
- Annotations
-
- Isolated tWW turn (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.44 | Max 0.94
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