Motif IL_31361.1 Version IL_31361.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BTS_325 | 4BTS | 0.5678 | 3 | Minor groove platform with extra cWW (H) | DA | SSU rRNA | U | 1248 | G | 1249 | G | 1250 | * | U | 1401 | G | 1404 | U | 1405 | A | 1407 | cWW | ncWB | cWW | tSH | ||
| 2 | IL_4V88_451 | 4V88 | 0.5226 | 3 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 1276 | G | 1277 | G | 1278 | * | U | 1430 | G | 1433 | U | 1434 | A | 1436 | cWW | ncWWa | cWW | tSH | ||
| 3 | IL_3J7A_058 | 3J7A | 0.5255 | 3 | Minor groove platform with extra cWW (H) | A | SSU rRNA | U | 1377 | G | 1378 | G | 1379 | * | U | 1676 | G | 1679 | U | 1680 | A | 1682 | cWW | ncWB | cWW | tSH | ||
| 4 | IL_3JAM_063 | 3JAM | 0.5404 | 3 | 2 | SSU rRNA | U | 1275 | G | 1276 | G | 1277 | * | U | 1428 | G | 1431 | U | 1432 | A | 1434 | ncWW | ncWB | cWW | tSH | |||
| 5 | IL_3J7Y_050 | 3J7Y | 0.2292 | 0 | A | LSU rRNA | U | 2953 | C | 2954 | U | 2955 | * | A | 2968 | A | 2969 | C | 2970 | A | 2971 | cWW | ncWw | cWW | ||||
| 6 | IL_3J9M_066 | 3J9M | 0.0000 | 0 | AA | SSU rRNA | U | 727 | C | 728 | U | 729 | * | A | 744 | A | 745 | A | 746 | A | 747 | cWW | cWW | tSH | ||||
| 7 | IL_5FDU_031 | 5FDU | 0.1870 | 0 | 1A | LSU rRNA | G | 922 | C | 923 | U | 924 | * | A | 945 | A | 946 | A | 947 | C | 948 | cWW | ncWW | cWW | tSH | |||
| 8 | IL_4V19_040 | 4V19 | 0.3385 | 0 | A | LSU rRNA | G | 1136 | C | 1137 | A | 1138 | * | U | 1073 | A | 1074 | A | 1075 | C | 1076 | cWW | ncWW | cWW | tSH | |||
| 9 | IL_4V88_411 | 4V88 | 0.3403 | 0 | Minor groove platform with extra cWW | A6 | SSU rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | ||
| 10 | IL_3J9M_067 | 3J9M | 0.4978 | 0 | AA | SSU rRNA | U | 742 | C | 743 | A | 744 | * | U | 729 | A | 730 | A | 731 | A | 732 | cWW | cWW | tSH | ||||
| 11 | IL_4V4Q_183 | 4V4Q | 0.5092 | 0 | Minor groove platform with extra cWW (H) | CA | SSU rRNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | ||
| 12 | IL_3J7P_216 | 3J7P | 0.6535 | 0 | S2 | SSU rRNA | C | 1373 | C | 1374 | G | 1375 | * | C | 1363 | U | 1364 | G | 1365 | G | 1366 | ncWW | ncSW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UCUGUGA | 4 |
| UCU*AACA | 1 |
| UCU*AAAA | 1 |
| GCU*AAAC | 1 |
| GCA*UAAC | 1 |
| GUA*UAAC | 1 |
| UCA*UAAA | 1 |
| CGG*CGAG | 1 |
| CCG*CUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*CUGUG | 4 |
| C*AA | 4 |
| C*AC | 1 |
| U*AA | 1 |
| G*GA | 1 |
| C*UG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Minor groove platform with extra cWW (H) (3)
- Minor groove platform with extra cWW (2)
- Basepair signature
- cWW-L-R-tSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.49 | Max 0.78
Coloring options: