#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 6 71-72-63-43-53-64-5
1 IL_4BTS_3254BTS0.56783Minor groove platform with extra cWW (H)DA SSU rRNAU1248G1249G1250*U1401G1404U1405A1407cWWncWBcWWtSH
2 IL_4V88_4514V880.52263Minor groove platform with extra cWWA6 SSU rRNAU1276G1277G1278*U1430G1433U1434A1436cWWncWWacWWtSH
3 IL_3J7A_0583J7A0.52553Minor groove platform with extra cWW (H)A SSU rRNAU1377G1378G1379*U1676G1679U1680A1682cWWncWBcWWtSH
4 IL_3JAM_0633JAM0.540432 SSU rRNAU1275G1276G1277*U1428G1431U1432A1434ncWWncWBcWWtSH
5 IL_3J7Y_0503J7Y0.22920A LSU rRNAU2953C2954U2955*A2968A2969C2970A2971cWWncWwcWW
6 IL_3J9M_0663J9M0.00000AA SSU rRNAU727C728U729*A744A745A746A747cWWcWWtSH
7 IL_5FDU_0315FDU0.187001A LSU rRNAG922C923U924*A945A946A947C948cWWncWWcWWtSH
8 IL_4V19_0404V190.33850A LSU rRNAG1136C1137A1138*U1073A1074A1075C1076cWWncWWcWWtSH
9 IL_4V88_4114V880.34030Minor groove platform with extra cWWA6 SSU rRNAG516U517A518*U533A534A535C536cWWncWWcWWtSH
10 IL_3J9M_0673J9M0.49780AA SSU rRNAU742C743A744*U729A730A731A732cWWcWWtSH
11 IL_4V4Q_1834V4Q0.50920Minor groove platform with extra cWW (H)CA SSU rRNAC67G68G69*C99G100A101G102cWWcWWcWWtSH
12 IL_3J7P_2163J7P0.65350S2 SSU rRNAC1373C1374G1375*C1363U1364G1365G1366ncWWncSWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
UGG*UCUGUGA4
UCU*AACA1
UCU*AAAA1
GCU*AAAC1
GCA*UAAC1
GUA*UAAC1
UCA*UAAA1
CGG*CGAG1
CCG*CUGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*CUGUG4
C*AA4
C*AC1
U*AA1
G*GA1
C*UG1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Minor groove platform with extra cWW (H) (3)
  • Minor groove platform with extra cWW (2)
  • Basepair signature
    cWW-L-R-tSH-cWW
    Heat map statistics
    Min 0.12 | Avg 0.49 | Max 0.78
    Help

    Coloring options:

    IL_4BTS_325:IL_4BTS_325 = 0IL_4BTS_325:IL_4V88_451 = 0.1153IL_4BTS_325:IL_3J7A_058 = 0.1514IL_4BTS_325:IL_3JAM_063 = 0.1982IL_4BTS_325:IL_3J7Y_050 = 0.6597IL_4BTS_325:IL_3J9M_066 = 0.5678IL_4BTS_325:IL_5FDU_031 = 0.6576IL_4BTS_325:IL_4V19_040 = 0.777IL_4BTS_325:IL_4V88_411 = 0.6228IL_4BTS_325:IL_3J9M_067 = 0.7207IL_4BTS_325:IL_4V4Q_183 = 0.5537IL_4BTS_325:IL_3J7P_216 = 0.7452IL_4V88_451:IL_4BTS_325 = 0.1153IL_4V88_451:IL_4V88_451 = 0IL_4V88_451:IL_3J7A_058 = 0.1459IL_4V88_451:IL_3JAM_063 = 0.1535IL_4V88_451:IL_3J7Y_050 = 0.6051IL_4V88_451:IL_3J9M_066 = 0.5226IL_4V88_451:IL_5FDU_031 = 0.6108IL_4V88_451:IL_4V19_040 = 0.7179IL_4V88_451:IL_4V88_411 = 0.5804IL_4V88_451:IL_3J9M_067 = 0.6927IL_4V88_451:IL_4V4Q_183 = 0.516IL_4V88_451:IL_3J7P_216 = 0.7332IL_3J7A_058:IL_4BTS_325 = 0.1514IL_3J7A_058:IL_4V88_451 = 0.1459IL_3J7A_058:IL_3J7A_058 = 0IL_3J7A_058:IL_3JAM_063 = 0.1329IL_3J7A_058:IL_3J7Y_050 = 0.5969IL_3J7A_058:IL_3J9M_066 = 0.5255IL_3J7A_058:IL_5FDU_031 = 0.628IL_3J7A_058:IL_4V19_040 = 0.7637IL_3J7A_058:IL_4V88_411 = 0.6256IL_3J7A_058:IL_3J9M_067 = 0.7303IL_3J7A_058:IL_4V4Q_183 = 0.5755IL_3J7A_058:IL_3J7P_216 = 0.7578IL_3JAM_063:IL_4BTS_325 = 0.1982IL_3JAM_063:IL_4V88_451 = 0.1535IL_3JAM_063:IL_3J7A_058 = 0.1329IL_3JAM_063:IL_3JAM_063 = 0IL_3JAM_063:IL_3J7Y_050 = 0.5925IL_3JAM_063:IL_3J9M_066 = 0.5404IL_3JAM_063:IL_5FDU_031 = 0.6352IL_3JAM_063:IL_4V19_040 = 0.7624IL_3JAM_063:IL_4V88_411 = 0.614IL_3JAM_063:IL_3J9M_067 = 0.7162IL_3JAM_063:IL_4V4Q_183 = 0.5798IL_3JAM_063:IL_3J7P_216 = 0.766IL_3J7Y_050:IL_4BTS_325 = 0.6597IL_3J7Y_050:IL_4V88_451 = 0.6051IL_3J7Y_050:IL_3J7A_058 = 0.5969IL_3J7Y_050:IL_3JAM_063 = 0.5925IL_3J7Y_050:IL_3J7Y_050 = 0IL_3J7Y_050:IL_3J9M_066 = 0.2292IL_3J7Y_050:IL_5FDU_031 = 0.2866IL_3J7Y_050:IL_4V19_040 = 0.4018IL_3J7Y_050:IL_4V88_411 = 0.4471IL_3J7Y_050:IL_3J9M_067 = 0.5702IL_3J7Y_050:IL_4V4Q_183 = 0.5758IL_3J7Y_050:IL_3J7P_216 = 0.7427IL_3J9M_066:IL_4BTS_325 = 0.5678IL_3J9M_066:IL_4V88_451 = 0.5226IL_3J9M_066:IL_3J7A_058 = 0.5255IL_3J9M_066:IL_3JAM_063 = 0.5404IL_3J9M_066:IL_3J7Y_050 = 0.2292IL_3J9M_066:IL_3J9M_066 = 0IL_3J9M_066:IL_5FDU_031 = 0.187IL_3J9M_066:IL_4V19_040 = 0.3385IL_3J9M_066:IL_4V88_411 = 0.3403IL_3J9M_066:IL_3J9M_067 = 0.4978IL_3J9M_066:IL_4V4Q_183 = 0.5092IL_3J9M_066:IL_3J7P_216 = 0.6535IL_5FDU_031:IL_4BTS_325 = 0.6576IL_5FDU_031:IL_4V88_451 = 0.6108IL_5FDU_031:IL_3J7A_058 = 0.628IL_5FDU_031:IL_3JAM_063 = 0.6352IL_5FDU_031:IL_3J7Y_050 = 0.2866IL_5FDU_031:IL_3J9M_066 = 0.187IL_5FDU_031:IL_5FDU_031 = 0IL_5FDU_031:IL_4V19_040 = 0.2831IL_5FDU_031:IL_4V88_411 = 0.3154IL_5FDU_031:IL_3J9M_067 = 0.493IL_5FDU_031:IL_4V4Q_183 = 0.5564IL_5FDU_031:IL_3J7P_216 = 0.6882IL_4V19_040:IL_4BTS_325 = 0.777IL_4V19_040:IL_4V88_451 = 0.7179IL_4V19_040:IL_3J7A_058 = 0.7637IL_4V19_040:IL_3JAM_063 = 0.7624IL_4V19_040:IL_3J7Y_050 = 0.4018IL_4V19_040:IL_3J9M_066 = 0.3385IL_4V19_040:IL_5FDU_031 = 0.2831IL_4V19_040:IL_4V19_040 = 0IL_4V19_040:IL_4V88_411 = 0.3806IL_4V19_040:IL_3J9M_067 = 0.5467IL_4V19_040:IL_4V4Q_183 = 0.5047IL_4V19_040:IL_3J7P_216 = 0.7068IL_4V88_411:IL_4BTS_325 = 0.6228IL_4V88_411:IL_4V88_451 = 0.5804IL_4V88_411:IL_3J7A_058 = 0.6256IL_4V88_411:IL_3JAM_063 = 0.614IL_4V88_411:IL_3J7Y_050 = 0.4471IL_4V88_411:IL_3J9M_066 = 0.3403IL_4V88_411:IL_5FDU_031 = 0.3154IL_4V88_411:IL_4V19_040 = 0.3806IL_4V88_411:IL_4V88_411 = 0IL_4V88_411:IL_3J9M_067 = 0.4378IL_4V88_411:IL_4V4Q_183 = 0.4335IL_4V88_411:IL_3J7P_216 = 0.6147IL_3J9M_067:IL_4BTS_325 = 0.7207IL_3J9M_067:IL_4V88_451 = 0.6927IL_3J9M_067:IL_3J7A_058 = 0.7303IL_3J9M_067:IL_3JAM_063 = 0.7162IL_3J9M_067:IL_3J7Y_050 = 0.5702IL_3J9M_067:IL_3J9M_066 = 0.4978IL_3J9M_067:IL_5FDU_031 = 0.493IL_3J9M_067:IL_4V19_040 = 0.5467IL_3J9M_067:IL_4V88_411 = 0.4378IL_3J9M_067:IL_3J9M_067 = 0IL_3J9M_067:IL_4V4Q_183 = 0.5534IL_3J9M_067:IL_3J7P_216 = 0.7175IL_4V4Q_183:IL_4BTS_325 = 0.5537IL_4V4Q_183:IL_4V88_451 = 0.516IL_4V4Q_183:IL_3J7A_058 = 0.5755IL_4V4Q_183:IL_3JAM_063 = 0.5798IL_4V4Q_183:IL_3J7Y_050 = 0.5758IL_4V4Q_183:IL_3J9M_066 = 0.5092IL_4V4Q_183:IL_5FDU_031 = 0.5564IL_4V4Q_183:IL_4V19_040 = 0.5047IL_4V4Q_183:IL_4V88_411 = 0.4335IL_4V4Q_183:IL_3J9M_067 = 0.5534IL_4V4Q_183:IL_4V4Q_183 = 0IL_4V4Q_183:IL_3J7P_216 = 0.5783IL_3J7P_216:IL_4BTS_325 = 0.7452IL_3J7P_216:IL_4V88_451 = 0.7332IL_3J7P_216:IL_3J7A_058 = 0.7578IL_3J7P_216:IL_3JAM_063 = 0.766IL_3J7P_216:IL_3J7Y_050 = 0.7427IL_3J7P_216:IL_3J9M_066 = 0.6535IL_3J7P_216:IL_5FDU_031 = 0.6882IL_3J7P_216:IL_4V19_040 = 0.7068IL_3J7P_216:IL_4V88_411 = 0.6147IL_3J7P_216:IL_3J9M_067 = 0.7175IL_3J7P_216:IL_4V4Q_183 = 0.5783IL_3J7P_216:IL_3J7P_216 = 0IL_4BTS_325IL_4V88_451IL_3J7A_058IL_3JAM_063IL_3J7Y_050IL_3J9M_066IL_5FDU_031IL_4V19_040IL_4V88_411IL_3J9M_067IL_4V4Q_183IL_3J7P_216Discrepancy0.000.200.400.60
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