Motif IL_31915.2 Version IL_31915.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 9-10 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3P22_001 | 3P22 | 0.0000 | 0 | A | Core ENE hairpin from KSHV PAN RNA | G | 26 | U | 27 | U | 28 | U | 29 | U | 30 | U | 31 | A | 32 | U | 33 | C | 34 | * | G | 7 | U | 8 | U | 9 | U | 10 | U | 11 | U | 12 | C | 13 | cWW | cWW |
| 2 | IL_6X5M_003 | 6X5M | 0.2671 | 0 | r | ggPAN RNA (39-MER) | G | 25 | U | 26 | U | 27 | U | 28 | U | 29 | U | 30 | A | 31 | U | 32 | C | 33 | * | G | 3 | U | 4 | U | 5 | U | 6 | U | 7 | U | 8 | C | 9 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUUUAUC*GUUUUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUUAU*UUUUU | 2 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Heat map statistics
- Min 0.27 | Avg 0.13 | Max 0.27
Coloring options: