Motif IL_32261.2 Version IL_32261.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_021 | 4CUX | 0.1739 | 1 | 2 | 18S RRNA | G | 363 | G | 364 | G | 365 | * | C | 376 | G | 377 | A | 378 | U | 379 | C | 381 | cWW | cWW | |
| 2 | IL_3U5F_021 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | G | 363 | G | 364 | G | 365 | * | C | 376 | G | 377 | A | 378 | U | 379 | C | 381 | cWW | cWW | |
| 3 | IL_4BPP_019 | 4BPP | 0.1361 | 1 | A | 18S RRNA | G | 354 | A | 355 | G | 356 | * | C | 367 | G | 368 | A | 369 | U | 370 | C | 372 | cWW | cWW | |
| 4 | IL_1FJG_063 | 1FJG | 0.8991 | 1 | A | SSU rRNA | C | 1459 | A | 1460 | G | 1461 | * | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*CGAUUC | 2 |
| GAG*CGAUUC | 1 |
| CAG*CGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GAUU | 2 |
| A*GAUU | 1 |
| A*GGGA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_32261.2 | Only in the parent motif |
|---|---|---|---|
| IL_32261.1 Compare | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 | IL_4CUX_021 | IL_4GXY_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_32261.2 | Only in the child motif |
|---|---|---|---|
| IL_32261.3 Compare | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019, IL_4CUX_021 | IL_3J7A_018, IL_1VX2_019 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.40 | Max 0.91
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