Motif IL_34628.1 Version IL_34628.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NVI_001 | 3NVI | 0.0453 | 1 | E | G | 15 | C | 16 | G | 17 | G | 19 | A | 20 | U | 21 | G | 22 | * | C | 4 | U | 5 | G | 6 | A | 7 | C | 8 | cWW | ntsS | tSH | tHS | cWw | cWW | |
| 2 | IL_3Q3Z_004 | 3Q3Z | 0.0000 | 1 | Kink-turn (H) | A | C | 16 | A | 17 | A | 18 | G | 20 | A | 21 | U | 22 | G | 23 | * | U | 54 | U | 55 | G | 56 | A | 57 | G | 58 | cWW | ntsS | tSH | tHS | cWw | cWW |
| 3 | IL_3NVI_002 | 3NVI | 0.2313 | 1 | Kink-turn | F | G | 15 | C | 16 | G | 17 | G | 19 | A | 20 | U | 21 | G | 22 | * | C | 4 | U | 5 | G | 6 | A | 7 | C | 8 | cWW | tsS | tSH | tHS | cWw | cWW |
| 4 | IL_3Q3Z_002 | 3Q3Z | 0.2378 | 1 | Kink-turn | V | C | 16 | A | 17 | A | 18 | G | 20 | A | 21 | U | 22 | G | 23 | * | U | 54 | U | 55 | G | 56 | A | 57 | G | 58 | cWW | ntsS | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGUGAUG*CUGAC | 2 |
| CAAUGAUG*UUGAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGAU*UGA | 2 |
| AAUGAU*UGA | 2 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_34628.1 | Only in the child motif |
|---|---|---|---|
| IL_34628.2 Compare | IL_3Q3Z_004, IL_3Q3Z_002, IL_3NVI_001 | IL_3NVI_002 |
- Annotations
-
- Kink-turn (2)
- (1)
- Kink-turn (H) (1)
- Basepair signature
- 12_cWW-tSS--tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.13 | Max 0.24
Coloring options: