Motif IL_35728.1 Version IL_35728.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-14 | 5-6 | 6-13 | 7-12 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_008 | 4WF9 | 0.2458 | 0 | 9x8 Sarcin-Ricin; G-bulge | X | LSU rRNA | C | 204 | U | 205 | U | 206 | A | 207 | G | 208 | U | 209 | A | 210 | C | 211 | C | 212 | * | G | 190 | A | 191 | G | 192 | A | 193 | A | 194 | C | 195 | U | 196 | G | 197 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWWa | cWW |
| 2 | IL_5TBW_005 | 5TBW | 0.0000 | 0 | tSH-tHW-tHH-tHS | 1 | LSU rRNA | A | 45 | U | 46 | C | 47 | A | 48 | A | 49 | U | 50 | A | 51 | A | 52 | G | 53 | * | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | cWW | cwW | tSH | tHH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGUACC*GAGAACUG | 1 |
| AUCAAUAAG*CUGAACUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGUAC*AGAACU | 1 |
| UCAAUAA*UGAACU | 1 |
- Annotations
-
- 9x8 Sarcin-Ricin; G-bulge (1)
- tSH-tHW-tHH-tHS (1)
- Basepair signature
- cWW-cWW-tSH-tHW-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.25 | Avg 0.12 | Max 0.25
Coloring options: