#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_1F1T_0031F1T0.64144AMALACHITE GREEN APTAMER RNAG23A27C28*G8C10tSWcWWcWW
2 IL_4LFB_0454LFB0.00002Minor groove platformA SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
3 IL_5J7L_0485J7L0.10352Minor groove platformAA SSU rRNAU1199U1202C1203*G1057G1058cWWtHScWW
4 IL_6CZR_1556CZR0.16132Minor groove platform1a SSU rRNAU1181G1184C1185*G1040G1041cWWntHScWW
5 IL_3RW6_0033RW60.35261Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU38A40U41*A20G21cWWtHScWW
6 IL_8C3A_5018C3A0.55400CM SSU rRNAU531A532A533*U515A516cWWtHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCAGC*GG2
GG(5BU)AAC*GAC1
UCAUC*GG1
UAAU*AG1
UAA*UA1
Non-Watson-Crick part of the motif
SequenceCounts
CAG*2
G(5BU)AA*A1
CAU*1
AA*1
A*1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (4)
  • (2)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.41 | Max 0.81
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