Motif IL_36388.1 Version IL_36388.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1F1T_003 | 1F1T | 0.6414 | 4 | A | MALACHITE GREEN APTAMER RNA | G | 23 | A | 27 | C | 28 | * | G | 8 | C | 10 | tSW | cWW | cWW | ||
2 | IL_4LFB_045 | 4LFB | 0.0000 | 2 | Minor groove platform | A | SSU rRNA | U | 1199 | G | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW | |
3 | IL_5J7L_048 | 5J7L | 0.1035 | 2 | Minor groove platform | AA | SSU rRNA | U | 1199 | U | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW | |
4 | IL_6CZR_155 | 6CZR | 0.1613 | 2 | Minor groove platform | 1a | SSU rRNA | U | 1181 | G | 1184 | C | 1185 | * | G | 1040 | G | 1041 | cWW | ntHS | cWW | |
5 | IL_3RW6_003 | 3RW6 | 0.3526 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 38 | A | 40 | U | 41 | * | A | 20 | G | 21 | cWW | tHS | cWW | |
6 | IL_8C3A_501 | 8C3A | 0.5540 | 0 | CM | SSU rRNA | U | 531 | A | 532 | A | 533 | * | U | 515 | A | 516 | cWW | tHS | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCAGC*GG | 2 |
GG(5BU)AAC*GAC | 1 |
UCAUC*GG | 1 |
UAAU*AG | 1 |
UAA*UA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAG* | 2 |
G(5BU)AA*A | 1 |
CAU* | 1 |
AA* | 1 |
A* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (4)
- (2)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.41 | Max 0.81
Coloring options: