Motif IL_36670.1 Version IL_36670.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AN9_038 | 5AN9 | 0.3376 | 0 | N | LSU rRNA | G | 3161 | U | 3162 | G | 3163 | * | U | 3191 | U | 3192 | U | 3193 | U | 3194 | U | 3195 | cWW | cwW | ncWW | |||||
| 2 | IL_4V9F_084 | 4V9F | 0.1954 | 0 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2494 | U | 2495 | C | 2496 | * | G | 2524 | G | 2525 | C | 2526 | U | 2527 | U | 2528 | cWW | cwW | cWW | cSH | |||
| 3 | IL_4IOA_088 | 4IOA | 0.0000 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | |||
| 4 | IL_5J7L_337 | 5J7L | 0.2860 | 0 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | cSH | |||
| 5 | IL_3J7Y_049 | 3J7Y | 0.4536 | 0 | A | LSU rRNA | A | 2946 | U | 2947 | C | 2948 | * | G | 2976 | G | 2977 | U | 2978 | U | 2979 | U | 2980 | cWW | cwW | cWW | cSH | ||||
| 6 | IL_3J9W_072 | 3J9W | 0.5417 | 0 | Major groove minor groove platform with extra cWW (H) | BA | LSU rRNA | G | 304 | A | 305 | C | 306 | * | G | 410 | G | 411 | A | 412 | U | 413 | C | 414 | cWW | ncWW | cWW | ||||
| 7 | IL_4GXY_009 | 4GXY | 0.7598 | 0 | Major groove minor groove platform with extra cWW | A | Cobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | |||
| 8 | IL_4BTS_330 | 4BTS | 0.6845 | 2 | DA | SSU rRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | cWW | cWW | ntSH | ncSW | cSH | ||
| 9 | IL_3J7P_218 | 3J7P | 0.8120 | 2 | S2 | SSU rRNA | A | 1402 | A | 1405 | G | 1406 | * | C | 1440 | U | 1441 | U | 1442 | C | 1443 | U | 1444 | cWW | cWW | ntSH | ncSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUC*GGUUU | 2 |
| ACUAG*CUUCU | 2 |
| GUG*UUUUU | 1 |
| GUC*GGCUU | 1 |
| AUA*UGUUU | 1 |
| GAC*GGAUC | 1 |
| CAC*GGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 3 |
| CUA*UUC | 2 |
| U*UUU | 1 |
| U*GCU | 1 |
| A*GAU | 1 |
| A*GAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Major groove minor groove platform with extra cWW (3)
- Major groove minor groove platform with extra cWW (H) (2)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.20 | Avg 0.54 | Max 0.97
Coloring options: