Motif IL_36670.1 Version IL_36670.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7		8	1-8	2-5	2-7	3-4	3-6	3-7	5-7
1	IL_5AN9_038	5AN9	0.3376	0		N	LSU rRNA	G	3161	U	3162	G	3163	*	U	3191	U	3192	U	3193	U	3194	U	3195	cWW		cwW	ncWW
2	IL_4V9F_084	4V9F	0.1954	0	Major groove minor groove platform with extra cWW	0	LSU rRNA	G	2494	U	2495	C	2496	*	G	2524	G	2525	C	2526	U	2527	U	2528	cWW		cwW	cWW			cSH
3	IL_4IOA_088	4IOA	0.0000	0	Major groove minor groove platform with extra cWW (H)	X	LSU rRNA	A	2438	U	2439	C	2440	*	G	2468	G	2469	U	2470	U	2471	U	2472	cWW		cwW	cWW			cSH
4	IL_5J7L_337	5J7L	0.2860	0	Major groove minor groove platform with extra cWW	DA	LSU rRNA	A	2459	U	2460	A	2461	*	U	2489	G	2490	U	2491	U	2492	U	2493	cWW		cwW	cWW			cSH
5	IL_3J7Y_049	3J7Y	0.4536	0		A	LSU rRNA	A	2946	U	2947	C	2948	*	G	2976	G	2977	U	2978	U	2979	U	2980	cWW		cwW	cWW			cSH
6	IL_3J9W_072	3J9W	0.5417	0	Major groove minor groove platform with extra cWW (H)	BA	LSU rRNA	G	304	A	305	C	306	*	G	410	G	411	A	412	U	413	C	414	cWW		ncWW	cWW
7	IL_4GXY_009	4GXY	0.7598	0	Major groove minor groove platform with extra cWW	A	Adenosylcobalamin riboswitch	C	105	A	106	C	107	*	G	122	G	123	A	124	A	125	G	126	cWW	ntHS		cWW	ntSH
8	IL_4BTS_330	4BTS	0.6845	2		DA	SSU rRNA	A	1317	A	1320	G	1321	*	C	1346	U	1347	U	1348	C	1349	U	1350	cWW	cWW		cWW	ntSH	ncSW	cSH
9	IL_3J7P_218	3J7P	0.8120	2		S2	SSU rRNA	A	1402	A	1405	G	1406	*	C	1440	U	1441	U	1442	C	1443	U	1444	cWW			cWW	ntSH	ncSW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AUC*GGUUU	2
ACUAG*CUUCU	2
GUG*UUUUU	1
GUC*GGCUU	1
AUA*UGUUU	1
GAC*GGAUC	1
CAC*GGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*GUU	3
CUA*UUC	2
U*UUU	1
U*GCU	1
A*GAU	1
A*GAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Major groove minor groove platform with extra cWW (3)
Major groove minor groove platform with extra cWW (H) (2)
Basepair signature: cWW-cWW-cSH-R-cWW
Heat map statistics: Min 0.20 | Avg 0.54 | Max 0.97

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