#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4BPP_0264BPP0.82161A18S RRNAC492A494C495*G477G478G479cWWtHScWW
2 IL_1VW3_0661VW30.33871A21S ribosomal RNAU1981A1982A1983*U2262U2263G2265cWWntHScWW
3 IL_4IOA_0774IOA0.28641Isolated tHS basepair with bulgesX LSU rRNAU2064A2065G2066*C2215G2216G2218cWWtHScWW
4 IL_2QBG_0822QBG0.26341B23S rRNAU2081A2082G2083*U2236G2237G2239cWWtHScWW
5 IL_3U5H_1003U5H0.27611525S rRNAU2423A2424G2425*U2604G2605G2607cWWtHScWW
6 IL_4NVV_0124NVV0.17071A23S Ribosomal RNAC312A313G314*U374G375G377cWWtHScWW
7 IL_4NVV_0824NVV0.00001A23S Ribosomal RNAC2103A2104G2105*C2248G2249G2251cWWtHScWW
8 IL_1S72_0761S720.12451Isolated tHS basepair with bulges (H)0 LSU rRNAC2122A2123G2124*C2269G2270G2272cWWtHScWW
9 IL_3U5H_1043U5H0.25532525S rRNAC2666A2667U2668*A2686G2687G2690cWWtHScWW
10 IL_4IOA_0824IOA0.26682Isolated tHS basepair with bulgesX LSU rRNAC2276A2277A2278*U2296G2297G2300cWWntHScWW
11 IL_4A1B_1024A1B0.25422126S RRNAC2655A2656G2657*C2675G2676G2679cWWtHScWW
12 IL_1S72_0781S720.297620 LSU rRNAC2331A2332G2333*C2351G2352G2355cWWtHScWW
13 IL_4NVV_0844NVV0.30572A23S Ribosomal RNAC2309A2310G2311*C2329G2330G2333cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAG*UGGG2
CAG*CGGG2
CUAC*GGG1
UAA*UUGG1
UAG*CGGG1
CAG*UGGG1
CAU*AGUAG1
CAA*UGUAG1
CAG*CGUAG1
CAG*CGAAG1
CAG*CGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG6
A*GUA3
UA*G1
A*UG1
A*GAA1
A*GGA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_37104.4Only in the child motif
IL_37104.5
Compare
IL_4NVV_082, IL_1VW3_066, IL_2QBG_082, IL_3U5H_100, IL_4NVV_084, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_1S72_078, IL_4NVV_012, IL_1S72_076, IL_4A1B_102IL_4CUV_103, IL_4CUV_109
Annotations
  • (10)
  • Isolated tHS basepair with bulges (2)
  • Isolated tHS basepair with bulges (H) (1)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.12 | Avg 0.36 | Max 0.99
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