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Motif IL_37104.4 Version IL_37104.4 of this group appears in releases 1.14 to 1.14

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4BPP_0264BPP0.82161A18S RRNAC492A494C495*G477G478G479cWWtHScWW
2 IL_1VW3_0661VW30.33871A21S ribosomal RNAU1981A1982A1983*U2262U2263G2265cWWntHScWW
3 IL_4IOA_0774IOA0.28641Isolated tHS basepair with bulgesX LSU rRNAU2064A2065G2066*C2215G2216G2218cWWtHScWW
4 IL_2QBG_0822QBG0.26341B23S rRNAU2081A2082G2083*U2236G2237G2239cWWtHScWW
5 IL_3U5H_1003U5H0.27611525S rRNAU2423A2424G2425*U2604G2605G2607cWWtHScWW
6 IL_4NVV_0124NVV0.17071A23S Ribosomal RNAC312A313G314*U374G375G377cWWtHScWW
7 IL_4NVV_0824NVV0.00001A23S Ribosomal RNAC2103A2104G2105*C2248G2249G2251cWWtHScWW
8 IL_1S72_0761S720.12451Isolated tHS basepair with bulges (H)0 LSU rRNAC2122A2123G2124*C2269G2270G2272cWWtHScWW
9 IL_3U5H_1043U5H0.25532525S rRNAC2666A2667U2668*A2686G2687G2690cWWtHScWW
10 IL_4IOA_0824IOA0.26682Isolated tHS basepair with bulgesX LSU rRNAC2276A2277A2278*U2296G2297G2300cWWntHScWW
11 IL_4A1B_1024A1B0.25422126S RRNAC2655A2656G2657*C2675G2676G2679cWWtHScWW
12 IL_1S72_0781S720.297620 LSU rRNAC2331A2332G2333*C2351G2352G2355cWWtHScWW
13 IL_4NVV_0844NVV0.30572A23S Ribosomal RNAC2309A2310G2311*C2329G2330G2333cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAG*UGGG2
CAG*CGGG2
CUAC*GGG1
UAA*UUGG1
UAG*CGGG1
CAG*UGGG1
CAU*AGUAG1
CAA*UGUAG1
CAG*CGUAG1
CAG*CGAAG1
CAG*CGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG6
A*GUA3
UA*G1
A*UG1
A*GAA1
A*GGA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_37104.4Only in the child motif
IL_37104.5
Compare		IL_4NVV_082, IL_1VW3_066, IL_2QBG_082, IL_3U5H_100, IL_4NVV_084, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_1S72_078, IL_4NVV_012, IL_1S72_076, IL_4A1B_102IL_4CUV_103, IL_4CUV_109
Annotations
  • (10)
  • Isolated tHS basepair with bulges (2)
  • Isolated tHS basepair with bulges (H) (1)
    • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.12 | Avg 0.36 | Max 0.99
    Help

    Coloring options:

    IL_4BPP_026:IL_4BPP_026 = 0IL_4BPP_026:IL_1VW3_066 = 0.6607IL_4BPP_026:IL_4IOA_077 = 0.7774IL_4BPP_026:IL_2QBG_082 = 0.8157IL_4BPP_026:IL_3U5H_100 = 0.8822IL_4BPP_026:IL_4NVV_012 = 0.8422IL_4BPP_026:IL_4NVV_082 = 0.8216IL_4BPP_026:IL_1S72_076 = 0.8269IL_4BPP_026:IL_3U5H_104 = 0.7991IL_4BPP_026:IL_4IOA_082 = 0.8668IL_4BPP_026:IL_4A1B_102 = 0.9098IL_4BPP_026:IL_1S72_078 = 0.9556IL_4BPP_026:IL_4NVV_084 = 0.9912IL_1VW3_066:IL_4BPP_026 = 0.6607IL_1VW3_066:IL_1VW3_066 = 0IL_1VW3_066:IL_4IOA_077 = 0.2521IL_1VW3_066:IL_2QBG_082 = 0.2592IL_1VW3_066:IL_3U5H_100 = 0.3247IL_1VW3_066:IL_4NVV_012 = 0.3381IL_1VW3_066:IL_4NVV_082 = 0.3387IL_1VW3_066:IL_1S72_076 = 0.3911IL_1VW3_066:IL_3U5H_104 = 0.4278IL_1VW3_066:IL_4IOA_082 = 0.4871IL_1VW3_066:IL_4A1B_102 = 0.5058IL_1VW3_066:IL_1S72_078 = 0.5276IL_1VW3_066:IL_4NVV_084 = 0.5581IL_4IOA_077:IL_4BPP_026 = 0.7774IL_4IOA_077:IL_1VW3_066 = 0.2521IL_4IOA_077:IL_4IOA_077 = 0IL_4IOA_077:IL_2QBG_082 = 0.1815IL_4IOA_077:IL_3U5H_100 = 0.2011IL_4IOA_077:IL_4NVV_012 = 0.3248IL_4IOA_077:IL_4NVV_082 = 0.2864IL_4IOA_077:IL_1S72_076 = 0.335IL_4IOA_077:IL_3U5H_104 = 0.345IL_4IOA_077:IL_4IOA_082 = 0.3825IL_4IOA_077:IL_4A1B_102 = 0.4082IL_4IOA_077:IL_1S72_078 = 0.412IL_4IOA_077:IL_4NVV_084 = 0.4293IL_2QBG_082:IL_4BPP_026 = 0.8157IL_2QBG_082:IL_1VW3_066 = 0.2592IL_2QBG_082:IL_4IOA_077 = 0.1815IL_2QBG_082:IL_2QBG_082 = 0IL_2QBG_082:IL_3U5H_100 = 0.1712IL_2QBG_082:IL_4NVV_012 = 0.2403IL_2QBG_082:IL_4NVV_082 = 0.2634IL_2QBG_082:IL_1S72_076 = 0.2907IL_2QBG_082:IL_3U5H_104 = 0.3685IL_2QBG_082:IL_4IOA_082 = 0.3835IL_2QBG_082:IL_4A1B_102 = 0.4084IL_2QBG_082:IL_1S72_078 = 0.4169IL_2QBG_082:IL_4NVV_084 = 0.4556IL_3U5H_100:IL_4BPP_026 = 0.8822IL_3U5H_100:IL_1VW3_066 = 0.3247IL_3U5H_100:IL_4IOA_077 = 0.2011IL_3U5H_100:IL_2QBG_082 = 0.1712IL_3U5H_100:IL_3U5H_100 = 0IL_3U5H_100:IL_4NVV_012 = 0.3006IL_3U5H_100:IL_4NVV_082 = 0.2761IL_3U5H_100:IL_1S72_076 = 0.3202IL_3U5H_100:IL_3U5H_104 = 0.4047IL_3U5H_100:IL_4IOA_082 = 0.3938IL_3U5H_100:IL_4A1B_102 = 0.3981IL_3U5H_100:IL_1S72_078 = 0.4167IL_3U5H_100:IL_4NVV_084 = 0.4105IL_4NVV_012:IL_4BPP_026 = 0.8422IL_4NVV_012:IL_1VW3_066 = 0.3381IL_4NVV_012:IL_4IOA_077 = 0.3248IL_4NVV_012:IL_2QBG_082 = 0.2403IL_4NVV_012:IL_3U5H_100 = 0.3006IL_4NVV_012:IL_4NVV_012 = 0IL_4NVV_012:IL_4NVV_082 = 0.1707IL_4NVV_012:IL_1S72_076 = 0.1765IL_4NVV_012:IL_3U5H_104 = 0.3395IL_4NVV_012:IL_4IOA_082 = 0.3347IL_4NVV_012:IL_4A1B_102 = 0.3253IL_4NVV_012:IL_1S72_078 = 0.3569IL_4NVV_012:IL_4NVV_084 = 0.385IL_4NVV_082:IL_4BPP_026 = 0.8216IL_4NVV_082:IL_1VW3_066 = 0.3387IL_4NVV_082:IL_4IOA_077 = 0.2864IL_4NVV_082:IL_2QBG_082 = 0.2634IL_4NVV_082:IL_3U5H_100 = 0.2761IL_4NVV_082:IL_4NVV_012 = 0.1707IL_4NVV_082:IL_4NVV_082 = 0IL_4NVV_082:IL_1S72_076 = 0.1245IL_4NVV_082:IL_3U5H_104 = 0.2553IL_4NVV_082:IL_4IOA_082 = 0.2668IL_4NVV_082:IL_4A1B_102 = 0.2542IL_4NVV_082:IL_1S72_078 = 0.2976IL_4NVV_082:IL_4NVV_084 = 0.3057IL_1S72_076:IL_4BPP_026 = 0.8269IL_1S72_076:IL_1VW3_066 = 0.3911IL_1S72_076:IL_4IOA_077 = 0.335IL_1S72_076:IL_2QBG_082 = 0.2907IL_1S72_076:IL_3U5H_100 = 0.3202IL_1S72_076:IL_4NVV_012 = 0.1765IL_1S72_076:IL_4NVV_082 = 0.1245IL_1S72_076:IL_1S72_076 = 0IL_1S72_076:IL_3U5H_104 = 0.2471IL_1S72_076:IL_4IOA_082 = 0.2026IL_1S72_076:IL_4A1B_102 = 0.2118IL_1S72_076:IL_1S72_078 = 0.2792IL_1S72_076:IL_4NVV_084 = 0.3065IL_3U5H_104:IL_4BPP_026 = 0.7991IL_3U5H_104:IL_1VW3_066 = 0.4278IL_3U5H_104:IL_4IOA_077 = 0.345IL_3U5H_104:IL_2QBG_082 = 0.3685IL_3U5H_104:IL_3U5H_100 = 0.4047IL_3U5H_104:IL_4NVV_012 = 0.3395IL_3U5H_104:IL_4NVV_082 = 0.2553IL_3U5H_104:IL_1S72_076 = 0.2471IL_3U5H_104:IL_3U5H_104 = 0IL_3U5H_104:IL_4IOA_082 = 0.1805IL_3U5H_104:IL_4A1B_102 = 0.225IL_3U5H_104:IL_1S72_078 = 0.2087IL_3U5H_104:IL_4NVV_084 = 0.3068IL_4IOA_082:IL_4BPP_026 = 0.8668IL_4IOA_082:IL_1VW3_066 = 0.4871IL_4IOA_082:IL_4IOA_077 = 0.3825IL_4IOA_082:IL_2QBG_082 = 0.3835IL_4IOA_082:IL_3U5H_100 = 0.3938IL_4IOA_082:IL_4NVV_012 = 0.3347IL_4IOA_082:IL_4NVV_082 = 0.2668IL_4IOA_082:IL_1S72_076 = 0.2026IL_4IOA_082:IL_3U5H_104 = 0.1805IL_4IOA_082:IL_4IOA_082 = 0IL_4IOA_082:IL_4A1B_102 = 0.1544IL_4IOA_082:IL_1S72_078 = 0.1989IL_4IOA_082:IL_4NVV_084 = 0.2704IL_4A1B_102:IL_4BPP_026 = 0.9098IL_4A1B_102:IL_1VW3_066 = 0.5058IL_4A1B_102:IL_4IOA_077 = 0.4082IL_4A1B_102:IL_2QBG_082 = 0.4084IL_4A1B_102:IL_3U5H_100 = 0.3981IL_4A1B_102:IL_4NVV_012 = 0.3253IL_4A1B_102:IL_4NVV_082 = 0.2542IL_4A1B_102:IL_1S72_076 = 0.2118IL_4A1B_102:IL_3U5H_104 = 0.225IL_4A1B_102:IL_4IOA_082 = 0.1544IL_4A1B_102:IL_4A1B_102 = 0IL_4A1B_102:IL_1S72_078 = 0.1507IL_4A1B_102:IL_4NVV_084 = 0.1886IL_1S72_078:IL_4BPP_026 = 0.9556IL_1S72_078:IL_1VW3_066 = 0.5276IL_1S72_078:IL_4IOA_077 = 0.412IL_1S72_078:IL_2QBG_082 = 0.4169IL_1S72_078:IL_3U5H_100 = 0.4167IL_1S72_078:IL_4NVV_012 = 0.3569IL_1S72_078:IL_4NVV_082 = 0.2976IL_1S72_078:IL_1S72_076 = 0.2792IL_1S72_078:IL_3U5H_104 = 0.2087IL_1S72_078:IL_4IOA_082 = 0.1989IL_1S72_078:IL_4A1B_102 = 0.1507IL_1S72_078:IL_1S72_078 = 0IL_1S72_078:IL_4NVV_084 = 0.1749IL_4NVV_084:IL_4BPP_026 = 0.9912IL_4NVV_084:IL_1VW3_066 = 0.5581IL_4NVV_084:IL_4IOA_077 = 0.4293IL_4NVV_084:IL_2QBG_082 = 0.4556IL_4NVV_084:IL_3U5H_100 = 0.4105IL_4NVV_084:IL_4NVV_012 = 0.385IL_4NVV_084:IL_4NVV_082 = 0.3057IL_4NVV_084:IL_1S72_076 = 0.3065IL_4NVV_084:IL_3U5H_104 = 0.3068IL_4NVV_084:IL_4IOA_082 = 0.2704IL_4NVV_084:IL_4A1B_102 = 0.1886IL_4NVV_084:IL_1S72_078 = 0.1749IL_4NVV_084:IL_4NVV_084 = 0IL_4BPP_026IL_1VW3_066IL_4IOA_077IL_2QBG_082IL_3U5H_100IL_4NVV_012IL_4NVV_082IL_1S72_076IL_3U5H_104IL_4IOA_082IL_4A1B_102IL_1S72_078IL_4NVV_084Discrepancy0.000.200.400.600.80
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