Motif IL_37104.3 Version IL_37104.3 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_026 | 4BPP | 0.8269 | 1 | A | 18S RRNA | C | 492 | A | 494 | C | 495 | * | G | 477 | G | 478 | G | 479 | cWW | tHS | cWW | |
| 2 | IL_4IOA_077 | 4IOA | 0.3350 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | tHS | cWW |
| 3 | IL_2QBG_082 | 2QBG | 0.2907 | 1 | B | 23S rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 4 | IL_3U5H_100 | 3U5H | 0.3202 | 1 | 5 | 25S rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW | |
| 5 | IL_3V2F_012 | 3V2F | 0.1653 | 1 | A | 23S Ribosomal RNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 6 | IL_1S72_076 | 1S72 | 0.0000 | 1 | Isolated tHS basepair with bulges (H) | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
| 7 | IL_3V2F_079 | 3V2F | 0.0992 | 1 | A | 23S Ribosomal RNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 8 | IL_3U5H_104 | 3U5H | 0.2471 | 2 | 5 | 25S rRNA | C | 2666 | A | 2667 | U | 2668 | * | A | 2686 | G | 2687 | G | 2690 | cWW | tHS | cWW | |
| 9 | IL_4IOA_082 | 4IOA | 0.2026 | 2 | Isolated tHS basepair with bulges | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW |
| 10 | IL_4A1B_102 | 4A1B | 0.2118 | 2 | 1 | 26S RRNA | C | 2655 | A | 2656 | G | 2657 | * | C | 2675 | G | 2676 | G | 2679 | cWW | tHS | cWW | |
| 11 | IL_1S72_078 | 1S72 | 0.2792 | 2 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*UGGG | 2 |
| CAG*CGGG | 2 |
| CUAC*GGG | 1 |
| UAG*CGGG | 1 |
| CAG*UGGG | 1 |
| CAU*AGUAG | 1 |
| CAA*UGUAG | 1 |
| CAG*CGUAG | 1 |
| CAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 6 |
| A*GUA | 3 |
| UA*G | 1 |
| A*GAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_37104.3 | Only in the parent motif |
|---|---|---|---|
| IL_37104.2 Compare | IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102 | IL_1S72_078 | IL_4BPP_063 |
| IL_85015.1 Compare | IL_1S72_078 | IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102 | IL_3V2F_085 |
Children motifs
| Child motif | Common motif instances | Only in IL_37104.3 | Only in the child motif |
|---|---|---|---|
| IL_37104.4 Compare | IL_2QBG_082, IL_1S72_078, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_4A1B_102 | IL_3V2F_012, IL_3V2F_079 | IL_4NVV_082, IL_1VW3_066, IL_4NVV_084, IL_4NVV_012 |
- Annotations
-
- (8)
- Isolated tHS basepair with bulges (2)
- Isolated tHS basepair with bulges (H) (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.35 | Max 0.96
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