Motif IL_37400.1 Version IL_37400.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-8 | 5-10 | 6-7 | 6-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_047 | 4BPP | 0.0000 | 1 | A | 18S RRNA | A | 872 | G | 873 | U | 874 | C | 875 | A | 876 | G | 877 | * | C | 888 | U | 889 | U | 890 | G | 892 | A | 893 | U | 894 | U | 895 | U | 896 | cWW | ncWWa | tSs | tHS | cWW | tsS | |||
| 2 | IL_1FJG_031 | 1FJG | 0.2901 | 1 | Kink-turn (H) | A | SSU rRNA | G | 683 | A | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | C | 701 | G | 703 | A | 704 | U | 705 | A | 706 | C | 707 | cWW | ncwW | tSH | tWH | tSs | tHS | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCAG*CUUGGAUUU | 1 |
| GAGUAG*CGCAGAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCA*UUGGAUU | 1 |
| AGUA*GCAGAUA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37400.1 | Only in the parent motif |
|---|---|---|---|
| IL_10554.1 Compare | IL_1FJG_031, IL_4BPP_047 | IL_1VWW_091, IL_1VX2_017, IL_1VX2_046 |
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (H) (1)
- (1)
- Basepair signature
- cWW-L-R-R-L-tWH-tHS-tSS-tSS-R-cWW
- Heat map statistics
- Min 0.29 | Avg 0.15 | Max 0.29
Coloring options: