Motif IL_39371.1 Version IL_39371.1 of this group appears in releases 3.28 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6JQ6_002 | 6JQ6 | 0.0000 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 34||||11_555 | A | 36||||11_555 | * | U | 58||||11_555 | A | 60||||11_555 | cWW | cWW |
| 2 | IL_6JQ6_005 | 6JQ6 | 0.0000 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 3 | IL_6JQ5_005 | 6JQ5 | 0.0796 | 2 | Multiple bulged bases | B | RNA (82-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 4 | IL_6JQ5_002 | 6JQ5 | 0.0792 | 2 | Multiple bulged bases | A | RNA (82-MER) | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 5 | IL_4IOA_024 | 4IOA | 0.5234 | 1 | Single bulged C (H) | X | LSU rRNA | G | 938 | G | 940 | * | C | 863 | C | 864 | cWW | cWW |
| 6 | IL_6CZR_134 | 6CZR | 0.9250 | 5 | 1a | SSU rRNA | C | 553 | G | 559 | * | C | 858 | G | 859 | cWW | cWW | |
| 7 | IL_4LFB_022 | 4LFB | 0.9901 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
| 8 | IL_5J7L_026 | 5J7L | 0.9434 | 5 | AA | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 4 |
| CGUAAAG*CG | 3 |
| GCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 4 |
| GUAAA* | 3 |
| C* | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (4)
- (3)
- Single bulged C (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.51 | Max 1.00
Coloring options: