Motif IL_39371.2 Version IL_39371.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_026 | 5J7L | 0.9501 | 5 | AA | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 2 | IL_4LFB_022 | 4LFB | 1.0009 | 5 | A | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 3 | IL_6CZR_134 | 6CZR | 0.9328 | 5 | 1a | SSU rRNA | C | 858 | G | 859 | * | C | 553 | G | 559 | cWW | cWW | |
| 4 | IL_6JOO_001 | 6JOO | 0.8350 | 3 | B | Guide RNA | G | 57 | C | 58 | * | G | 61 | C | 65 | cWW | cWW | |
| 5 | IL_6JQ5_002 | 6JQ5 | 0.1184 | 2 | Multiple bulged bases | A | Hatchet ribozyme | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 6 | IL_6JQ5_005 | 6JQ5 | 0.0796 | 2 | Multiple bulged bases | B | Hatchet ribozyme | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 7 | IL_6JQ6_005 | 6JQ6 | 0.0000 | 2 | Multiple bulged bases | U | Hatchet ribozyme | U | 34 | A | 36 | * | U | 58 | A | 60 | cWW | cWW |
| 8 | IL_6JQ6_002 | 6JQ6 | 0.0000 | 2 | Multiple bulged bases | U | Hatchet ribozyme | U | 34||||11_555 | A | 36||||11_555 | * | U | 58||||11_555 | A | 60||||11_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 4 |
| CG*CGUAAAG | 3 |
| GC*GUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 4 |
| *GUAAA | 3 |
| *UUU | 1 |
- Annotations
-
- (4)
- Multiple bulged bases (4)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.54 | Max 1.01
Coloring options: