Motif IL_39526.1 Version IL_39526.1 of this group appears in releases 0.1 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3P59_001 | 3P59 | 0.0000 | 0 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 2 | IL_2PN4_002 | 2PN4 | 0.5598 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 3 | IL_2PN4_007 | 2PN4 | 0.6904 | 0 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 4 | IL_2NOK_005 | 2NOK | 0.8048 | 0 | C+D | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 5 | IL_2NOK_001 | 2NOK | 0.8013 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 5 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | 0.6 |
|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2012-04-02 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_39526.1 | Only in the child motif |
|---|---|---|---|
| IL_39526.2 Compare | IL_2PN4_002, IL_2NOK_005, IL_3P59_001, IL_2NOK_001 | IL_2PN4_007 |
- Annotations
-
- (5)
- Basepair signature
- 09_cWW------cWW
- Heat map statistics
- Min 0.04 | Avg 0.39 | Max 0.80
Coloring options: