Motif IL_39830.1 Version IL_39830.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_002 | 5V1K | 0.0000 | 0 | A+B | RNA (12-mer) | C | 103 | G | 104 | A | 105 | A | 106 | 5BU | 107||A | * | A | 206 | 5BU | 207 | 8RJ | 208 | A | 209 | G | 210 | cWW | tSH | tWW | cWW | ||
| 2 | IL_2R8S_006 | 2R8S | 0.5544 | 0 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | C | 255 | A | 256 | G | 257 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| A(5BU)(8RJ)AG*CGAA(5BU) | 1 |
| CCAAG*UGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (5BU)(8RJ)A*GAA | 1 |
| CAA*GCA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN variation (1)
- (1)
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Heat map statistics
- Min 0.55 | Avg 0.28 | Max 0.55
Coloring options: