Motif IL_40387.1 Version IL_40387.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_093 | 2QBG | 0.0000 | 0 | B | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH | |||||
| 2 | IL_2XXA_009 | 2XXA | 0.2599 | 0 | G | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | ||||||
| 3 | IL_2XXA_002 | 2XXA | 0.7786 | 0 | Other IL | F | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | ncWW | cWW | ncSH | ||||
| 4 | IL_2OEU_001 | 2OEU | 0.8377 | 0 | A+B | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW | ||||||
| 5 | IL_2XZM_073 | 2XZM | 0.7548 | 2 | A | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | ncWW | cWW | ncSW | ncSH | ||||
| 6 | IL_2ZJR_087 | 2ZJR | 0.9621 | 0 | Major groove minor groove platform with extra cWW (H) | X | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUG*CCUUC | 2 |
| AUA*UGUUU | 1 |
| AUG*CCAAU | 1 |
| ACUAG*CUUCU | 1 |
| AUC*GGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 2 |
| U*CUU | 2 |
| U*CAA | 1 |
| CUA*UUC | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_40387.1 | Only in the parent motif |
|---|---|---|---|
| IL_06751.1 Compare | IL_2XXA_002, IL_2XXA_009, IL_2OEU_001, IL_2XZM_073 | IL_2QBG_093, IL_2ZJR_087 | IL_1ET4_007, IL_1ET4_001, IL_1ET4_005, IL_1ET4_003, IL_1ET4_009 |
| IL_16722.1 Compare | IL_2QBG_093, IL_2ZJR_087 | IL_2XXA_002, IL_2XXA_009, IL_2OEU_001, IL_2XZM_073 | IL_1S72_082 |
Children motifs
| Child motif | Common motif instances | Only in IL_40387.1 | Only in the child motif |
|---|---|---|---|
| IL_40387.2 Compare | IL_2QBG_093, IL_2ZJR_087, IL_2XXA_009, IL_2OEU_001, IL_2XZM_073 | IL_2XXA_002 |
- Annotations
-
- (4)
- Other IL (1)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- 08_cWW-cWW-cWW--cSH
- Heat map statistics
- Min 0.26 | Avg 0.63 | Max 0.99
Coloring options: