Motif IL_40892.1 Version IL_40892.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_101 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | A | 2520 | U | 2521 | A | 2523 | A | 2524 | G | 2525 | C | 2526 | * | G | 2584 | U | 2587 | cWW | cWS | cWW | |
| 2 | IL_4A1B_099 | 4A1B | 0.5306 | 3 | 1 | 26S RRNA | G | 2515 | U | 2516 | A | 2518 | A | 2519 | G | 2520 | A | 2521 | * | U | 2573 | C | 2576 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAAGC*GGGU | 1 |
| GUGAAGA*UUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAG*GG | 1 |
| UGAAG*UG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_40892.1 | Only in the child motif |
|---|---|---|---|
| IL_40892.2 Compare | IL_4A1B_099, IL_3U5H_101 | IL_4CUV_107 |
- Annotations
- Basepair signature
- cWW-L-L-L-L-cWW
- Heat map statistics
- Min 0.53 | Avg 0.27 | Max 0.53
Coloring options: