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Motif IL_40979.1 Version IL_40979.1 of this group appears in releases 3.2 to 3.7

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-64-5
1 IL_4PMI_0044PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46||||13_455G47||||13_455G48||||13_455C49||||13_455*G70||||13_455G71||||13_455A73||||13_455C74||||13_455cWWntWWcWWtWWcWW
2 IL_4PMI_0104PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46||||24_444G47||||24_444G48||||24_444C49||||24_444*G70||||24_444G71||||24_444A73||||24_444C74||||24_444cWWntWWcWWtWWcWW
3 IL_4PMI_0124PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46||||6_445G47||||6_445G48||||6_445C49||||6_445*G70||||6_445G71||||6_445A73||||6_445C74||||6_445cWWntWWcWWtWWcWW
4 IL_4PMI_0064PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46||||18_445G47||||18_445G48||||18_445C49||||18_445*G70||||18_445G71||||18_445A73||||18_445C74||||18_445cWWntWWcWWtWWcWW
5 IL_4PMI_0084PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46G47G48C49*G70G71A73C74cWWntWWcWWtWWcWW
6 IL_4PMI_0024PMI0.00001tWW and non-canonical cWWARev-Response-Element RNAG46||||12_455G47||||12_455G48||||12_455C49||||12_455*G70||||12_455G71||||12_455A73||||12_455C74||||12_455cWWntWWcWWtWWcWW
7 IL_4EYA_0104EYA0.80590Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
8 IL_1KUQ_0031KUQ0.95481Tandem non-canonical cWW pairsB16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWncWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGGC*GGUAC6
CUUG*CUUG1
GAGAG*UGGU1
Non-Watson-Crick part of the motif
SequenceCounts
GG*GUA6
UU*UU1
AGA*GG1

Release history

Release3.33.43.53.63.73.2
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-09-26
StatusExact matchExact matchExact matchExact matchExact matchNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tWW and non-canonical cWW (6)
  • Tandem non-canonical cWW pairs (2)
    • Basepair signature
    cWW-cWW-tWW-cWW
    Heat map statistics
    Min 0.48 | Avg 0.35 | Max 0.95
    Help

    Coloring options:

    IL_4PMI_004:IL_4PMI_004 = 0IL_4PMI_004:IL_4PMI_010 = 0IL_4PMI_004:IL_4PMI_012 = 0IL_4PMI_004:IL_4PMI_006 = 0IL_4PMI_004:IL_4PMI_008 = 0IL_4PMI_004:IL_4PMI_002 = 0IL_4PMI_004:IL_4EYA_010 = 0.8059IL_4PMI_004:IL_1KUQ_003 = 0.9548IL_4PMI_010:IL_4PMI_004 = 0IL_4PMI_010:IL_4PMI_010 = 0IL_4PMI_010:IL_4PMI_012 = 0IL_4PMI_010:IL_4PMI_006 = 0IL_4PMI_010:IL_4PMI_008 = 0IL_4PMI_010:IL_4PMI_002 = 0IL_4PMI_010:IL_4EYA_010 = 0.8059IL_4PMI_010:IL_1KUQ_003 = 0.9548IL_4PMI_012:IL_4PMI_004 = 0IL_4PMI_012:IL_4PMI_010 = 0IL_4PMI_012:IL_4PMI_012 = 0IL_4PMI_012:IL_4PMI_006 = 0IL_4PMI_012:IL_4PMI_008 = 0IL_4PMI_012:IL_4PMI_002 = 0IL_4PMI_012:IL_4EYA_010 = 0.8059IL_4PMI_012:IL_1KUQ_003 = 0.9548IL_4PMI_006:IL_4PMI_004 = 0IL_4PMI_006:IL_4PMI_010 = 0IL_4PMI_006:IL_4PMI_012 = 0IL_4PMI_006:IL_4PMI_006 = 0IL_4PMI_006:IL_4PMI_008 = 0IL_4PMI_006:IL_4PMI_002 = 0IL_4PMI_006:IL_4EYA_010 = 0.8059IL_4PMI_006:IL_1KUQ_003 = 0.9548IL_4PMI_008:IL_4PMI_004 = 0IL_4PMI_008:IL_4PMI_010 = 0IL_4PMI_008:IL_4PMI_012 = 0IL_4PMI_008:IL_4PMI_006 = 0IL_4PMI_008:IL_4PMI_008 = 0IL_4PMI_008:IL_4PMI_002 = 0IL_4PMI_008:IL_4EYA_010 = 0.8059IL_4PMI_008:IL_1KUQ_003 = 0.9548IL_4PMI_002:IL_4PMI_004 = 0IL_4PMI_002:IL_4PMI_010 = 0IL_4PMI_002:IL_4PMI_012 = 0IL_4PMI_002:IL_4PMI_006 = 0IL_4PMI_002:IL_4PMI_008 = 0IL_4PMI_002:IL_4PMI_002 = 0IL_4PMI_002:IL_4EYA_010 = 0.8059IL_4PMI_002:IL_1KUQ_003 = 0.9548IL_4EYA_010:IL_4PMI_004 = 0.8059IL_4EYA_010:IL_4PMI_010 = 0.8059IL_4EYA_010:IL_4PMI_012 = 0.8059IL_4EYA_010:IL_4PMI_006 = 0.8059IL_4EYA_010:IL_4PMI_008 = 0.8059IL_4EYA_010:IL_4PMI_002 = 0.8059IL_4EYA_010:IL_4EYA_010 = 0IL_4EYA_010:IL_1KUQ_003 = 0.4791IL_1KUQ_003:IL_4PMI_004 = 0.9548IL_1KUQ_003:IL_4PMI_010 = 0.9548IL_1KUQ_003:IL_4PMI_012 = 0.9548IL_1KUQ_003:IL_4PMI_006 = 0.9548IL_1KUQ_003:IL_4PMI_008 = 0.9548IL_1KUQ_003:IL_4PMI_002 = 0.9548IL_1KUQ_003:IL_4EYA_010 = 0.4791IL_1KUQ_003:IL_1KUQ_003 = 0IL_4PMI_004IL_4PMI_010IL_4PMI_012IL_4PMI_006IL_4PMI_008IL_4PMI_002IL_4EYA_010IL_1KUQ_003Discrepancy0.000.200.400.600.80
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