Motif IL_40979.3 Version IL_40979.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PMI_002 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||12_455 | G | 47||||12_455 | G | 48||||12_455 | C | 49||||12_455 | * | G | 70||||12_455 | G | 71||||12_455 | A | 73||||12_455 | C | 74||||12_455 | cWW | ntWW | cWW | tWW | cWW |
| 2 | IL_4PMI_008 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW |
| 3 | IL_4PMI_006 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||18_445 | G | 47||||18_445 | G | 48||||18_445 | C | 49||||18_445 | * | G | 70||||18_445 | G | 71||||18_445 | A | 73||||18_445 | C | 74||||18_445 | cWW | ntWW | cWW | tWW | cWW |
| 4 | IL_4PMI_012 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||6_445 | G | 47||||6_445 | G | 48||||6_445 | C | 49||||6_445 | * | G | 70||||6_445 | G | 71||||6_445 | A | 73||||6_445 | C | 74||||6_445 | cWW | ntWW | cWW | tWW | cWW |
| 5 | IL_4PMI_010 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||24_444 | G | 47||||24_444 | G | 48||||24_444 | C | 49||||24_444 | * | G | 70||||24_444 | G | 71||||24_444 | A | 73||||24_444 | C | 74||||24_444 | cWW | ntWW | cWW | tWW | cWW |
| 6 | IL_4PMI_004 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||13_455 | G | 47||||13_455 | G | 48||||13_455 | C | 49||||13_455 | * | G | 70||||13_455 | G | 71||||13_455 | A | 73||||13_455 | C | 74||||13_455 | cWW | ntWW | cWW | tWW | cWW |
| 7 | IL_6DLR_005 | 6DLR | 0.4750 | 1 | tWW and near cWH | A | Guanidine-I riboswitch | G | 77 | G | 78 | A | 79 | G | 80 | * | C | 92 | A | 93 | G | 95 | C | 96 | cWW | cBW | tWW | cWW | |
| 8 | IL_1KUQ_003 | 1KUQ | 0.9548 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 6 |
| GGAG*CAGGC | 1 |
| GAGAG*UGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 6 |
| GA*AGG | 1 |
| AGA*GG | 1 |
- Annotations
-
- tWW and non-canonical cWW (6)
- Tandem non-canonical cWW pairs (1)
- tWW and near cWH (1)
- Basepair signature
- cWW-cWW-tWW-cWW
- Heat map statistics
- Min 0.48 | Avg 0.29 | Max 0.95
Coloring options: