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Motif IL_42622.5 Version IL_42622.5 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_5J7L_2475J7L0.34890Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
2 IL_8VTW_0038VTW0.47460Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
3 IL_7A0S_0037A0S0.45590Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
4 IL_5J7L_0645J7L0.44160Single bulged AAA SSU rRNAU1440A1441G1442*C1460G1461cWWcWW
5 IL_3IWN_0013IWN0.41740Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
6 IL_7TZS_0037TZS0.40350Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
7 IL_3K0J_0023K0J0.48530Minor groove platform relatedERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW
8 IL_8C3A_4518C3A0.37840Minor groove platformCM SSU rRNAC1445A1446C1447*G1163G1164cWWcWW
9 IL_4V88_4454V880.38410Minor groove platformA6 SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
10 IL_5J7L_0425J7L0.30730Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
11 IL_4LFB_0384LFB0.29310Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
12 IL_1U6B_0071U6B0.26260Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
13 IL_6DTD_0036DTD0.18570Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
14 IL_5ML7_0095ML70.23220Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
15 IL_2QWY_0092QWY0.00000Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
16 IL_5TBW_0395TBW0.24520Minor groove platform1 LSU rRNAU1050U1051U1052*A997A998ncSHcWWtHScWW
17 IL_8C3A_0428C3A0.20110Minor groove platform1 LSU rRNAU1046U1047U1048*A993A994ncSHcWWntHScWW
18 IL_6DLR_0036DLR0.23580Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
19 IL_7MLW_0047MLW0.26360Minor groove platformFGuanidine-I riboswitchC45U46G47*C16G17ncSHcWWtHScWW
20 IL_5T83_0035T830.34060Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
21 IL_8C3A_0178C3A0.29231Minor groove platform1 LSU rRNAC439U440G442*C487G488cSHcWWtHScWW
22 IL_4WF9_0324WF90.30460Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
23 IL_8VTW_0278VTW0.32120Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
24 IL_4V9F_0344V9F0.30280Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
25 IL_7A0S_0287A0S0.29600Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
26 IL_8C3A_0998C3A0.37051Minor groove platform1 LSU rRNAU2779C2781C2782*G2390A2391cSHcWWcWW
27 IL_5TBW_0945TBW0.45231Minor groove platform1 LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
28 IL_7A0S_0767A0S0.44191Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
29 IL_5J7L_3245J7L0.40771Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
30 IL_4V9F_0754V9F0.43391Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
31 IL_4WF9_0814WF90.45031Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
32 IL_8VTW_0808VTW0.47161Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
33 IL_3IGI_0053IGI0.86912Multiple bulged basesAGroup IIC intronU234G236U238*G128G129cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
UACC*GA6
CAC*GG4
CUG*CG3
CCU*AG2
UUU*AA2
UAG*CG1
GAU*AC1
GAG*CC1
GAA*UC1
CAG*CG1
UAG*CA1
CUUG*CG1
UACU*AA1
UUGAU*GG1
Non-Watson-Crick part of the motif
SequenceCounts
A*10
C*9
AC*7
U*5
UU*1
UGA*1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (29)
  • Minor groove platform related (2)
  • Multiple bulged bases (1)
  • Single bulged A (1)
    • Basepair signature
    cWW-cSH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.38 | Max 0.87
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