Motif IL_43124.1 Version IL_43124.1 of this group appears in releases 1.1 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3Q1Q_006 | 3Q1Q | 0.9183 | 0 | B | RNase P RNA | G | 198 | G | 199 | C | 200 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | ncBW | cWW | |||
| 2 | IL_3U5H_012 | 3U5H | 0.5108 | 1 | 5 | 25S rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | ncWW | ncWW | cSH | cWW | ||
| 3 | IL_4A1B_093 | 4A1B | 0.4812 | 0 | 1 | 26S RRNA | G | 2386 | C | 2387 | G | 2388 | G | 2389 | * | U | 2974 | A | 2975 | C | 2976 | cWW | cWW | cSH | cWW | ||
| 4 | IL_4B5R_003 | 4B5R | 0.2594 | 0 | Major groove platform with extra pair (H) | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | |
| 5 | IL_3V7E_007 | 3V7E | 0.1284 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | C | 244 | A | 245 | A | 246 | C | 247 | * | G | 288 | U | 289 | G | 290 | cWW | tSH | cSH | cWW | |
| 6 | IL_3GX5_003 | 3GX5 | 0.0000 | 0 | A | RNA (94-MER) | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW | ||
| 7 | IL_4AOB_003 | 4AOB | 0.0943 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW | |
| 8 | IL_3NPB_004 | 3NPB | 0.1439 | 0 | A | TL5 RNA | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | ncSH | cWW | ||
| 9 | IL_1J2B_003 | 1J2B | 0.3661 | 0 | D | tRNA(Val) | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | ncWW | cWW | ||||
| 10 | IL_3U5H_071 | 3U5H | 0.4833 | 0 | 5 | 25S rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | cSW | cWW | |||
| 11 | IL_1X8W_009 | 1X8W | 0.8360 | 0 | A | Tetrahymena ribozyme RNA | G | 331 | U | 403 | U | 404 | G | 405 | * | C | 316 | U | 317 | C | 318 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 5 |
| GGCU*AGC | 1 |
| GAGUG*UUC | 1 |
| GCGG*UAC | 1 |
| GAGG*CGC | 1 |
| GAUA*UGC | 1 |
| GUUG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 5 |
| GC*G | 1 |
| AGU*U | 1 |
| CG*A | 1 |
| AG*G | 1 |
| AU*G | 1 |
| UU*U | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 |
|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_43124.1 | Only in the parent motif |
|---|---|---|---|
| IL_27618.2 Compare | IL_1X8W_009, IL_3Q1Q_006, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 | IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003 | IL_3U5H_096, IL_1S72_072, IL_4A1B_089, IL_2ZJR_059 |
| IL_10007.2 Compare | IL_3V7E_007, IL_3GX5_003, IL_4B5R_003, IL_4AOB_003 | IL_1X8W_009, IL_3Q1Q_006, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 | IL_2QBG_087, IL_1S72_078, IL_4A1B_102 |
Children motifs
| Child motif | Common motif instances | Only in IL_43124.1 | Only in the child motif |
|---|---|---|---|
| IL_43124.2 Compare | IL_3V7E_007, IL_1X8W_009, IL_3U5H_071, IL_4B5R_003, IL_3Q1Q_006, IL_1J2B_003, IL_4AOB_003, IL_3GX5_003, IL_4A1B_093, IL_3U5H_012 | IL_3NPB_004 | IL_4KQY_003 |
- Annotations
-
- (8)
- Major groove platform with extra pair (H) (2)
- Major groove platform with extra pair (1)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.51 | Max 0.98
Coloring options: