Motif IL_43124.3 Version IL_43124.3 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-5 | 2-6 | 3-4 | 6-7 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1X8W_009 | 1X8W | 0.8360 | 0 | A | Tetrahymena ribozyme RNA | C | 316 | U | 317 | C | 318 | * | G | 331 | U | 403 | U | 404 | G | 405 | cWW | cWW | |||||
2 | IL_3U5H_071 | 3U5H | 0.4833 | 0 | 5 | 25S rRNA | U | 1824 | G | 1825 | C | 1826 | * | G | 1618 | A | 1619 | U | 1620 | A | 1621 | cWW | cWS | cWW | ||||
3 | IL_1J2B_003 | 1J2B | 0.3661 | 0 | D | tRNA(Val) | C | 926 | G | 927 | C | 928 | * | G | 944 | A | 945 | G | 946 | G | 947 | cWW | ncWW | |||||
4 | IL_4NVV_089 | 4NVV | 0.2895 | 0 | A | 23S Ribosomal RNA | U | 2505 | G | 2506 | G | 2507 | * | C | 2468 | U | 2469 | G | 2470 | A | 2471 | tHS | cWW | ncWW | cWW | |||
5 | IL_4KQY_003 | 4KQY | 0.1591 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | G | 77 | U | 78 | G | 79 | * | C | 45 | A | 46 | A | 47 | C | 48 | cWW | ntHS | cWW | cSH | ||
6 | IL_4AOB_003 | 4AOB | 0.0943 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | ncSH | ||
7 | IL_3GX5_003 | 3GX5 | 0.0000 | 0 | A | RNA (94-MER) | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | cSH | |||
8 | IL_3V7E_007 | 3V7E | 0.1284 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | G | 288 | U | 289 | G | 290 | * | C | 244 | A | 245 | A | 246 | C | 247 | cWW | tHS | cWW | cSH | ||
9 | IL_4B5R_003 | 4B5R | 0.2594 | 0 | Major groove platform with extra pair (H) | A | SAM-I riboswitch | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | cSH | ||
10 | IL_1VW3_032 | 1VW3 | 0.3417 | 0 | A | 21S ribosomal RNA | U | 1179 | C | 1180 | U | 1181 | * | A | 919 | A | 920 | G | 921 | A | 922 | cWW | ncWWa | cWW | ||||
11 | IL_4A1B_093 | 4A1B | 0.4812 | 0 | 1 | 26S RRNA | U | 2974 | A | 2975 | C | 2976 | * | G | 2386 | C | 2387 | G | 2388 | G | 2389 | cWW | cWW | cWW | cSH | |||
12 | IL_3U5H_012 | 3U5H | 0.5108 | 1 | 5 | 25S rRNA | U | 177 | U | 178 | C | 179 | * | G | 237 | A | 238 | G | 239 | G | 241 | cWW | ncWW | ncWW | cSH | |||
13 | IL_3Q1Q_006 | 3Q1Q | 0.9183 | 0 | B | RNase P RNA | A | 179 | G | 180 | C | 181 | * | G | 198 | G | 199 | C | 200 | U | 201 | cWW | ncWB | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUG*CAAC | 5 |
CUC*GUUG | 1 |
UGC*GAUA | 1 |
CGC*GAGG | 1 |
CUGA*UGG | 1 |
UCU*AAGA | 1 |
UAC*GCGG | 1 |
UUC*GAGUG | 1 |
AGC*GGCU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U*AA | 5 |
U*UU | 1 |
G*AU | 1 |
G*AG | 1 |
UG*G | 1 |
C*AG | 1 |
A*CG | 1 |
U*AGU | 1 |
G*GC | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_43124.3 | Only in the parent motif |
---|---|---|---|
IL_43124.2 Compare | IL_3V7E_007, IL_1X8W_009, IL_3U5H_071, IL_4KQY_003, IL_4B5R_003, IL_3Q1Q_006, IL_1J2B_003, IL_4AOB_003, IL_3GX5_003, IL_4A1B_093, IL_3U5H_012 | IL_4NVV_089, IL_1VW3_032 |
Children motifs
Child motif | Common motif instances | Only in IL_43124.3 | Only in the child motif |
---|---|---|---|
IL_77277.1 Compare | IL_1X8W_009, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 | IL_3V7E_007, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_3U5H_012 | IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_071, IL_3U5H_096, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4CUV_015 |
IL_11015.1 Compare | IL_3V7E_007, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_3U5H_012 | IL_1X8W_009, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 | IL_4L81_001, IL_2QBG_087, IL_4CUV_095 |
- Annotations
-
- (9)
- Major groove platform with extra pair (H) (2)
- Major groove platform with extra pair (2)
- Basepair signature
- cWW-cSH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.49 | Max 0.99
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