#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 71-61-72-52-63-46-7
1 IL_1X8W_0091X8W0.83600ATetrahymena ribozyme RNAC316U317C318*G331U403U404G405cWWcWW
2 IL_3U5H_0713U5H0.48330525S rRNAU1824G1825C1826*G1618A1619U1620A1621cWWcWScWW
3 IL_1J2B_0031J2B0.36610DtRNA(Val)C926G927C928*G944A945G946G947cWWncWW
4 IL_4NVV_0894NVV0.28950A23S Ribosomal RNAU2505G2506G2507*C2468U2469G2470A2471tHScWWncWWcWW
5 IL_4KQY_0034KQY0.15910Major groove platform with extra pairA SAM-I riboswitchG77U78G79*C45A46A47C48cWWntHScWWcSH
6 IL_4AOB_0034AOB0.09430Major groove platform with extra pairA SAM-I riboswitchG56U57G58*C44A45A46C47cWWtHScWWncSH
7 IL_3GX5_0033GX50.00000ARNA (94-MER)G56U57G58*C44A45A46C47cWWtHScWWcSH
8 IL_3V7E_0073V7E0.12840Major groove platform with extra pair (H)D SAM-I riboswitchG288U289G290*C244A245A246C247cWWtHScWWcSH
9 IL_4B5R_0034B5R0.25940Major groove platform with extra pair (H)A SAM-I riboswitchG56U57G58*C44A45A46C47cWWtHScWWcSH
10 IL_1VW3_0321VW30.34170A21S ribosomal RNAU1179C1180U1181*A919A920G921A922cWWncWWacWW
11 IL_4A1B_0934A1B0.48120126S RRNAU2974A2975C2976*G2386C2387G2388G2389cWWcWWcWWcSH
12 IL_3U5H_0123U5H0.51081525S rRNAU177U178C179*G237A238G239G241cWWncWWncWWcSH
13 IL_3Q1Q_0063Q1Q0.91830BRNase P RNAA179G180C181*G198G199C200U201cWWncWBcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUG*CAAC5
CUC*GUUG1
UGC*GAUA1
CGC*GAGG1
CUGA*UGG1
UCU*AAGA1
UAC*GCGG1
UUC*GAGUG1
AGC*GGCU1
Non-Watson-Crick part of the motif
SequenceCounts
U*AA5
U*UU1
G*AU1
G*AG1
UG*G1
C*AG1
A*CG1
U*AGU1
G*GC1
Annotations
  • (9)
  • Major groove platform with extra pair (H) (2)
  • Major groove platform with extra pair (2)
  • Basepair signature
    cWW-cSH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.49 | Max 0.99
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