Motif IL_11015.1 Version IL_11015.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-5 | 3-4 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_095 | 4CUV | 0.6720 | 1 | 1 | 25S RRNA | C | 2235 | G | 2236 | C | 2237 | * | G | 2206 | A | 2207 | A | 2208 | G | 2210 | cWW | |||||
| 2 | IL_3U5H_012 | 3U5H | 0.4857 | 1 | 5 | 25S rRNA | U | 177 | U | 178 | C | 179 | * | G | 237 | A | 238 | G | 239 | G | 241 | cWW | ncWW | ncWW | cSH | ||
| 3 | IL_4KQY_003 | 4KQY | 0.1628 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | G | 77 | U | 78 | G | 79 | * | C | 45 | A | 46 | A | 47 | C | 48 | cWW | ntHS | cWW | cSH | |
| 4 | IL_4AOB_003 | 4AOB | 0.1246 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | ncSH | |
| 5 | IL_3GX5_003 | 3GX5 | 0.0777 | 0 | A | RNA (94-MER) | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | cSH | ||
| 6 | IL_4L81_001 | 4L81 | 0.0000 | 0 | A | SAM-I/IV variant riboswitch aptamer domain | G | 46 | U | 47 | G | 48 | * | C | 24 | A | 25 | A | 26 | C | 27 | cWW | tHS | cWW | cSH | ||
| 7 | IL_3V7E_007 | 3V7E | 0.1432 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | G | 288 | U | 289 | G | 290 | * | C | 244 | A | 245 | A | 246 | C | 247 | cWW | tHS | cWW | cSH | |
| 8 | IL_4B5R_003 | 4B5R | 0.2495 | 0 | Major groove platform with extra pair (H) | A | SAM-I riboswitch | G | 56 | U | 57 | G | 58 | * | C | 44 | A | 45 | A | 46 | C | 47 | cWW | tHS | cWW | cSH | |
| 9 | IL_2QBG_087 | 2QBG | 0.5580 | 1 | B | 23S rRNA | A | 2297 | A | 2298 | U | 2299 | * | A | 2317 | G | 2318 | G | 2319 | U | 2321 | tHS | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUG*CAAC | 6 |
| GAAUG*CGC | 1 |
| UUC*GAGUG | 1 |
| AAU*AGGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*AA | 6 |
| AAU*G | 1 |
| U*AGU | 1 |
| A*GGU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_11015.1 | Only in the parent motif |
|---|---|---|---|
| IL_43124.3 Compare | IL_3V7E_007, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_3U5H_012 | IL_4L81_001, IL_2QBG_087, IL_4CUV_095 | IL_1X8W_009, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 |
| IL_06421.1 Compare | IL_2QBG_087 | IL_3V7E_007, IL_4L81_001, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_3U5H_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_11015.1 | Only in the child motif |
|---|---|---|---|
| IL_11015.2 Compare | IL_3V7E_007, IL_2QBG_087, IL_4CUV_095, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_4L81_001, IL_3U5H_012 | IL_3U5H_071, IL_1J2B_003 |
- Annotations
-
- (5)
- Major groove platform with extra pair (H) (2)
- Major groove platform with extra pair (2)
- Basepair signature
- cWW-cSH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.97
Coloring options: