Motif IL_77277.1 Version IL_77277.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3Q1Q_006 | 3Q1Q | 0.7528 | 0 | B | RNase P RNA | G | 198 | G | 199 | C | 200 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | ncBW | cWW | |||
| 2 | IL_4IOA_061 | 4IOA | 0.3697 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | cWW | ||
| 3 | IL_4A1B_093 | 4A1B | 0.3462 | 0 | 1 | 26S RRNA | G | 2386 | C | 2387 | G | 2388 | G | 2389 | * | U | 2974 | A | 2975 | C | 2976 | cWW | cWW | cSH | cWW | ||
| 4 | IL_3U5H_096 | 3U5H | 0.3033 | 0 | 5 | 25S rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | ||
| 5 | IL_4CUV_099 | 4CUV | 0.3146 | 0 | 1 | 25S RRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | ncWW | cSH | cWW | ||
| 6 | IL_4CUV_015 | 4CUV | 0.2606 | 1 | 1 | 25S RRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | cWW | ncWW | ncSH | cWW | ||
| 7 | IL_1VW3_032 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | A | 919 | A | 920 | G | 921 | A | 922 | * | U | 1179 | C | 1180 | U | 1181 | cWW | ncWWa | cWW | |||
| 8 | IL_4NVV_089 | 4NVV | 0.3091 | 0 | A | 23S Ribosomal RNA | C | 2468 | U | 2469 | G | 2470 | A | 2471 | * | U | 2505 | G | 2506 | G | 2507 | cWW | ncWW | tSH | cWW | ||
| 9 | IL_1J2B_003 | 1J2B | 0.4571 | 0 | D | tRNA(Val) | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | ncWW | cWW | ||||
| 10 | IL_4A1B_089 | 4A1B | 0.4334 | 1 | 1 | 26S RRNA | G | 2201 | A | 2202 | A | 2203 | G | 2205 | * | C | 2230 | G | 2231 | C | 2232 | cWW | ncWW | ncSH | cWW | ||
| 11 | IL_4CUV_071 | 4CUV | 0.4587 | 0 | 1 | 25S RRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | ncSW | cWW | |||
| 12 | IL_3U5H_071 | 3U5H | 0.4727 | 0 | 5 | 25S rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | cSW | cWW | |||
| 13 | IL_1VW3_056 | 1VW3 | 0.5070 | 0 | A | 21S ribosomal RNA | A | 1754 | A | 1755 | U | 1756 | A | 1757 | * | U | 1793 | U | 1794 | U | 1795 | cWW | cWW | ||||
| 14 | IL_1VW3_029 | 1VW3 | 0.6092 | 0 | A | 21S ribosomal RNA | U | 818 | U | 819 | U | 820 | U | 821 | * | G | 805 | G | 806 | A | 807 | cWW | ncWW | cWW | |||
| 15 | IL_1S72_053 | 1S72 | 0.7481 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | |||
| 16 | IL_1X8W_009 | 1X8W | 0.7588 | 0 | A | Tetrahymena ribozyme RNA | G | 331 | U | 403 | U | 404 | G | 405 | * | C | 316 | U | 317 | C | 318 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGG*UAC | 3 |
| GAUA*UGC | 2 |
| GGCU*AGC | 1 |
| GGUCA*UAC | 1 |
| UUC*GAGUG | 1 |
| AAGA*UCU | 1 |
| CUGA*UGG | 1 |
| GAGG*CGC | 1 |
| GAAUG*CGC | 1 |
| AAUA*UUU | 1 |
| UUUU*GGA | 1 |
| GACU*ACC | 1 |
| GUUG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG*A | 3 |
| AU*G | 2 |
| GC*G | 1 |
| GUC*A | 1 |
| U*AGU | 1 |
| AG*C | 1 |
| UG*G | 1 |
| AG*G | 1 |
| AAU*G | 1 |
| AU*U | 1 |
| UU*G | 1 |
| AC*C | 1 |
| UU*U | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77277.1 | Only in the parent motif |
|---|---|---|---|
| IL_43124.3 Compare | IL_1X8W_009, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 | IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_071, IL_3U5H_096, IL_4A1B_089, IL_4IOA_061, IL_1VW3_029, IL_4CUV_015 | IL_3V7E_007, IL_4KQY_003, IL_4B5R_003, IL_3GX5_003, IL_4AOB_003, IL_3U5H_012 |
| IL_31663.1 Compare | IL_3U5H_096, IL_4A1B_089, IL_4IOA_061 | IL_1X8W_009, IL_1VW3_056, IL_1S72_053, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_1VW3_032, IL_1J2B_003, IL_1VW3_029, IL_3U5H_071, IL_4A1B_093 | IL_1S72_072 |
| IL_55214.1 Compare | IL_1VW3_029, IL_1VW3_056, IL_1S72_053 | IL_1X8W_009, IL_4IOA_061, IL_4CUV_099, IL_4CUV_015, IL_4CUV_071, IL_4NVV_089, IL_3Q1Q_006, IL_3U5H_096, IL_1VW3_032, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093 | IL_3MEI_004, IL_1VW3_022, IL_2O3V_003, IL_4NVV_035, IL_4KR6_002 |
Children motifs
- Annotations
-
- (16)
- Basepair signature
- cWW-cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.53 | Max 0.97
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