RNA 3D Hub //

Motif IL_43733.1 Version IL_43733.1 of this group appears in releases 3.18 to 3.19

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4V9F_0874V9F0.81352Isolated non-canonical cWW pair0 LSU rRNAG2609U2610G2613*U2545U2546C2547cWWcwWcWW
2 IL_3E5C_0013E5C0.55193Isolated non-canonical cWW pairASMK box (SAM-III) RiboswitchA27G28C32*G12A13U14cWWcWWcWW
3 IL_6E8U_0016E8U0.33003Isolated non-canonical cWW pairBRNA (37-MER)A6A7A11*U30G31U32cWWcWWcWW
4 IL_4IOA_0374IOA0.00001Isolated non-canonical cWW pair (H)X LSU rRNAG1042A1043G1045*C1132G1133C1134cWWcWWcWW
5 IL_5J7L_2825J7L0.10631Isolated non-canonical cWW pairDA LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
6 IL_4Y4O_2184Y4O0.11911Isolated non-canonical cWW pair (H)2A LSU rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
7 IL_5TBW_1455TBW0.37511Isolated non-canonical cWW pair4 5.8S rRNAU93C94A96*U64A65A66cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUG*CGC3
GUGAG*UUC1
AGAUGC*GAU1
AAGGAA*UGU1
UCGA*UAA1
Non-Watson-Crick part of the motif
SequenceCounts
AU*G3
UGA*U1
GAUG*A1
AGGA*G1
CG*A1

Release history

Release3.183.19
Date2019-05-032019-05-31
StatusNew id, > 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (5)
  • Isolated non-canonical cWW pair (H) (2)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.42 | Max 0.85
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3522 s