Motif IL_44067.3 Version IL_44067.3 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 3-13 | 4-11 | 5-9 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_001 | 1S72 | 0.1507 | 0 | Triple sheared with non-canonical cWW (H) | 0 | LSU rRNA | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | |||
| 2 | IL_3U5H_016 | 3U5H | 0.1366 | 0 | 8+5 | 5.8S rRNA | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | cWW | ntSH | tSH | ncSW | tSH | ntHS | cWw | cWW | ||
| 3 | IL_2QBG_006 | 2QBG | 0.0871 | 0 | B | 23S rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | ncSW | tSH | tHS | cWw | cWW | ||
| 4 | IL_3V2F_001 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | tSH | tSH | tHS | cWw | cWW | ||||
| 5 | IL_4IOA_001 | 4IOA | 0.0648 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | ||
| 6 | IL_2XZM_038 | 2XZM | 0.9500 | 0 | A | 18S RRNA | G | 715 | G | 716 | G | 717 | A | 718 | G | 719 | U | 720 | A | 721 | * | U | 680 | G | 681 | C | 682 | A | 683 | A | 684 | A | 685 | C | 686 | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGAUG*CUGAAAC | 3 |
| GUGGAUU*AUGAAAU | 1 |
| ACGGAUC*GUGAAAU | 1 |
| UGCAAAC*GGGAGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAU*UGAAA | 4 |
| CGGAU*UGAAA | 1 |
| GCAAA*GGAGU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_44067.3 | Only in the parent motif |
|---|---|---|---|
| IL_44067.2 Compare | IL_2XZM_038, IL_2QBG_006, IL_1S72_001, IL_3U5H_016, IL_3V2F_001 | IL_4IOA_001 | IL_2ZJR_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_44067.3 | Only in the child motif |
|---|---|---|---|
| IL_44067.4 Compare | IL_2QBG_006, IL_3V2F_001, IL_4IOA_001, IL_1S72_001, IL_3U5H_016 | IL_2XZM_038 |
- Annotations
-
- (4)
- Triple sheared with non-canonical cWW (H) (2)
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.34 | Max 0.98
Coloring options: