#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1MJI_0031MJI0.28792Multiple bulged basesD5S rRNA fragmentC30C31*G51G54cWWcWW
2 IL_5XWP_0015XWP0.13652Multiple bulged basesCRNA (59-MER)A5C6*G22U25cWWcWW
3 IL_5W1H_0015W1H0.02612Multiple bulged basesBmature crRNAA-23G-22*C-7U-4cWWcWW
4 IL_5WLH_0015WLH0.00002Multiple bulged basesBpre-crRNAA-23G-22*C-7U-4cWWcWW
5 IL_8C3A_0118C3A0.137421 LSU rRNAG176C177*G238C241cWWcWW
6 IL_8C3A_4008C3A0.16142Multiple bulged bases (H)CM SSU rRNAA298A299*U113U116cWWcWW
7 IL_4V88_3924V880.13962Multiple bulged basesA6 SSU rRNAA300A301*U113U116cWWcWW
8 IL_1KXK_0011KXK0.27062Aai5g group II Self-splicing intronG61G62*U8C11cWWcWW
9 IL_4V9F_0454V9F0.40772Bulged stacked bases0 LSU rRNAG1269U1270*A1286C1289cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AG*CAAU2
AA*UCGU2
CC*GAAG1
AC*GACU1
GC*GACC1
GG*UAUC1
GU*AAUC1
Non-Watson-Crick part of the motif
SequenceCounts
*AA3
*AC2
*CG2
*AU2

Release history

Release3.873.88
Date2024-08-142024-09-11
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (5)
  • (2)
  • Bulged stacked bases (1)
  • Multiple bulged bases (H) (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.03 | Avg 0.26 | Max 0.83
    Help

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