Motif IL_44546.2 Version IL_44546.2 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MJI_003 | 1MJI | 0.2879 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
| 2 | IL_5XWP_001 | 5XWP | 0.1365 | 2 | Multiple bulged bases | C | RNA (59-MER) | A | 5 | C | 6 | * | G | 22 | U | 25 | cWW | cWW |
| 3 | IL_5W1H_001 | 5W1H | 0.0261 | 2 | Multiple bulged bases | B | mature crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 4 | IL_5WLH_001 | 5WLH | 0.0000 | 2 | Multiple bulged bases | B | pre-crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 5 | IL_8C3A_011 | 8C3A | 0.1374 | 2 | 1 | LSU rRNA | G | 176 | C | 177 | * | G | 238 | C | 241 | cWW | cWW | |
| 6 | IL_8C3A_400 | 8C3A | 0.1614 | 2 | Multiple bulged bases | CM | SSU rRNA | A | 298 | A | 299 | * | U | 113 | U | 116 | cWW | cWW |
| 7 | IL_4V88_392 | 4V88 | 0.1396 | 2 | Multiple bulged bases | A6 | SSU rRNA | A | 300 | A | 301 | * | U | 113 | U | 116 | cWW | cWW |
| 8 | IL_1KXK_001 | 1KXK | 0.2706 | 2 | A | Group II catalytic intron | G | 61 | G | 62 | * | U | 8 | C | 11 | cWW | cWW | |
| 9 | IL_4V9F_045 | 4V9F | 0.4077 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*CAAU | 2 |
| AA*UCGU | 2 |
| CC*GAAG | 1 |
| AC*GACU | 1 |
| GC*GACC | 1 |
| GG*UAUC | 1 |
| GU*AAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 3 |
| *AC | 2 |
| *CG | 2 |
| *AU | 2 |
- Annotations
-
- Multiple bulged bases (6)
- (2)
- Bulged stacked bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.26 | Max 0.83
Coloring options: