Motif IL_45612.1 Version IL_45612.1 of this group appears in releases 3.77 to 3.83

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	5-6
1	IL_5F9R_001	5F9R	0.1137	2	A	RNA (116-MER)	C	58	A	59	A	60	G	61	U	63	*	A	26	G	27	G	29	cWW	cWW
2	IL_5VW1_001	5VW1	0.0826	2	C	sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
3	IL_5B2T_001	5B2T	0.0602	2	A	Guide RNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
4	IL_5FQ5_001	5FQ5	0.0587	2	A	SGRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
5	IL_7QR0_001	7QR0	0.0614	2	A	TRAC sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
6	IL_7QQX_001	7QQX	0.0485	2	A	FANCF sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
7	IL_7QQP_001	7QQP	0.0597	2	A	AAVS1 sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
8	IL_7ZO1_001	7ZO1	0.0567	2	A	CD34 sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
9	IL_7QR8_001	7QR8	0.0000	2	A	PTPRC sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
10	IL_4ZT0_003	4ZT0	0.0874	2	D	single-guide RNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGUU*AGAG	10

Non-Watson-Crick part of the motif

Sequence	Counts
AAGU*GA	10

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-L-R-L-cWW-L
Heat map statistics: Min 0.04 | Avg 0.07 | Max 0.14

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Coloring options: Nucleotide numbers

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