Motif IL_45612.3 Version IL_45612.3 of this group appears in releases 3.85 to 3.86

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	5-6
1	IL_8KAH_002	8KAH	0.1734	2	I+A	RNA (65-MER)	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	ncWW	cWW
2	IL_5F9R_001	5F9R	0.1273	2	A	RNA (116-MER)	C	58	A	59	A	60	G	61	U	63	*	A	26	G	27	G	29	cWW	cWW
3	IL_6AEG_001	6AEG	0.0000	2	A	RNA (95-MER)	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
4	IL_5VW1_001	5VW1	0.0875	2	C	sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
5	IL_7Z4D_001	7Z4D	0.1173	2	A	sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
6	IL_7ZO1_001	7ZO1	0.0975	2	A	CD34 sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
7	IL_7QQP_001	7QQP	0.0978	2	A	AAVS1 sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
8	IL_7QR0_001	7QR0	0.1011	2	A	TRAC sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
9	IL_5FQ5_001	5FQ5	0.0960	2	A	SGRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
10	IL_7QQX_001	7QQX	0.0916	2	A	FANCF sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
11	IL_5B2T_001	5B2T	0.0855	2	A	Guide RNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
12	IL_7QR8_001	7QR8	0.0871	2	A	PTPRC sgRNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW
13	IL_4ZT0_003	4ZT0	0.1251	2	D	single-guide RNA	C	40	A	41	A	42	G	43	U	45	*	A	26	G	27	G	29	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGUU*AGAG	13

Non-Watson-Crick part of the motif

Sequence	Counts
AAGU*GA	13

Release history

Release	3.85	3.86
Date	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (13)
Basepair signature: cWW-L-R-L-cWW-L
Heat map statistics: Min 0.04 | Avg 0.09 | Max 0.19

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Coloring options: Nucleotide numbers

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