Motif IL_46607.1 Version IL_46607.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_111 | 8C3A | 0.3484 | 1 | 1 | LSU rRNA | G | 2835 | A | 2836 | U | 2837 | C | 2839 | * | G | 2795 | G | 2796 | C | 2797 | U | 2798 | cWW | cWWa | ncSH | ncWW | cWW |
2 | IL_8C3A_473 | 8C3A | 0.2752 | 1 | CM | SSU rRNA | A | 1740 | A | 1741 | A | 1742 | G | 1744 | * | C | 1631 | G | 1632 | C | 1633 | U | 1634 | cWW | cWWa | ncWW | cWW | |
3 | IL_1GID_008 | 1GID | 0.0000 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 103 | A | 104 | A | 105 | U | 107 | * | A | 214 | G | 215 | C | 216 | C | 217 | cWW | cWW | cWW | cWW | |
4 | IL_1J2B_001 | 1J2B | 0.3539 | 1 | C | tRNA(Val) | G | 943 | G | 944 | A | 945 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUUC*GGCU | 1 |
AAAAG*CGCU | 1 |
GAAUU*AGCC | 1 |
GGAGG*CGCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUU*GC | 1 |
AAA*GC | 1 |
AAU*GC | 1 |
GAG*GC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.28 | Max 0.49
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