Motif IL_46648.3 Version IL_46648.3 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_114 | 4A1B | 0.3581 | 1 | 1 | 26S RRNA | U | 2879 | U | 2880 | * | A | 2897 | A | 2898 | G | 2900 | ntHS | cWW | cWW | |
| 2 | IL_3U5H_117 | 3U5H | 0.2974 | 1 | 5 | 25S rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | |
| 3 | IL_1S72_087 | 1S72 | 0.1288 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW |
| 4 | IL_3V2F_096 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 5 | IL_2QBG_098 | 2QBG | 0.0878 | 1 | B | 23S rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 6 | IL_4IOA_093 | 4IOA | 0.1114 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | ntHS | cWW | cWW |
| 7 | IL_4LCK_003 | 4LCK | 0.4399 | 1 | C | T-BOX RIBOSWITCH STEM I | A | 77 | C | 78 | * | G | 28 | A | 29 | U | 31 | cWW | cWW | ||
| 8 | IL_3U5H_078 | 3U5H | 0.8389 | 0 | 5 | 25S rRNA | C | 1670 | C | 1671 | * | G | 1776 | U | 1777 | G | 1778 | cWW | cWW | ||
| 9 | IL_4A1B_069 | 4A1B | 0.8947 | 0 | 1 | 26S RRNA | G | 1849 | C | 1850 | * | G | 1643 | A | 1644 | C | 1645 | cWW | cWW | ||
| 10 | IL_2QWY_005 | 2QWY | 0.9156 | 0 | B | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 4 |
| UU*AACG | 1 |
| UA*UAAG | 1 |
| AC*GAUU | 1 |
| CC*GUG | 1 |
| GC*GAC | 1 |
| UG*CUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 5 |
| *U | 2 |
| *AC | 1 |
| *AU | 1 |
| *A | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_46648.3 | Only in the parent motif |
|---|---|---|---|
| IL_46648.2 Compare | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_3U5H_078, IL_1S72_087, IL_3U5H_117, IL_4IOA_093, IL_2QWY_005 | IL_4LCK_003, IL_4A1B_069 | IL_2XZM_040, IL_3U5H_097, IL_4A1B_094 |
| IL_16166.3 Compare | IL_4A1B_069 | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_3U5H_078, IL_1S72_087, IL_3U5H_117, IL_4IOA_093, IL_4LCK_003, IL_2QWY_005 | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_46648.3 | Only in the child motif |
|---|---|---|---|
| IL_46648.4 Compare | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_3U5H_078, IL_1S72_087, IL_3U5H_117, IL_4IOA_093, IL_4LCK_003, IL_2QWY_005, IL_4A1B_069 | IL_4KQY_004 |
- Annotations
-
- (8)
- Major groove platform with intercalation (H) (2)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.52 | Max 0.97
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