Motif IL_16166.3 Version IL_16166.3 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4FNJ_004 | 4FNJ | 0.1422 | 0 | A | RNA (35-MER) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW | |
| 2 | IL_1U6B_010 | 1U6B | 0.0000 | 0 | Basepair outside cWW, intercalation pocket | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 3 | IL_1NTB_001 | 1NTB | 0.7116 | 0 | B+A | RNA (18-mer) | G | 114 | G | 115 | * | C | 5 | G | 6 | C | 7 | cWW | cWW | |
| 4 | IL_4A1B_069 | 4A1B | 0.9834 | 0 | 1 | 26S RRNA | G | 1849 | C | 1850 | * | G | 1643 | A | 1644 | C | 1645 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 2 |
| GG*CGC | 1 |
| GC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *G | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16166.3 | Only in the parent motif |
|---|---|---|---|
| IL_16166.2 Compare | IL_1U6B_010, IL_1NTB_001, IL_4FNJ_004 | IL_4A1B_069 | |
| IL_87218.1 Compare | IL_4A1B_069 | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_2ZJR_023, IL_3U5F_020, IL_1FJG_012 |
Children motifs
| Child motif | Common motif instances | Only in IL_16166.3 | Only in the child motif |
|---|---|---|---|
| IL_16166.4 Compare | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_4A1B_069 | |
| IL_46648.3 Compare | IL_4A1B_069 | IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001 | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_3U5H_078, IL_1S72_087, IL_3U5H_117, IL_4IOA_093, IL_4LCK_003, IL_2QWY_005 |
- Annotations
-
- Basepair outside cWW, intercalation pocket (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.57 | Max 0.98
Coloring options: