Motif IL_46648.6 Version IL_46648.6 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3WBM_004 | 3WBM | 0.9955 | 0 | Other IL | Y+X | RNA (25-MER) | G | 2 | U | 3 | A | 4 | * | U | 23 | C | 24 | cWW | cWW | ||
| 2 | IL_2QWY_005 | 2QWY | 0.9156 | 0 | B | SAM-II riboswitch | C | 43 | U | 44 | A | 45 | * | U | 21 | G | 22 | cWW | cWW | |||
| 3 | IL_4A1B_069 | 4A1B | 0.8947 | 0 | 1 | 26S RRNA | G | 1643 | A | 1644 | C | 1645 | * | G | 1849 | C | 1850 | cWW | cWW | |||
| 4 | IL_3U5H_078 | 3U5H | 0.8389 | 0 | 5 | 25S rRNA | G | 1776 | U | 1777 | G | 1778 | * | C | 1670 | C | 1671 | cWW | cWW | |||
| 5 | IL_4C7O_002 | 4C7O | 0.8625 | 0 | Single stack bend | E | SRP RNA | A | 36 | U | 37 | G | 38 | * | C | 8 | U | 9 | cWW | cWW | ||
| 6 | IL_4LCK_003 | 4LCK | 0.4399 | 1 | C | T-BOX RIBOSWITCH STEM I | G | 28 | A | 29 | U | 31 | * | A | 77 | C | 78 | cWW | cWW | |||
| 7 | IL_4A1B_114 | 4A1B | 0.3581 | 1 | 1 | 26S RRNA | A | 2897 | A | 2898 | G | 2900 | * | U | 2879 | U | 2880 | cWW | ntSH | cWW | ||
| 8 | IL_3U5H_117 | 3U5H | 0.2974 | 1 | 5 | 25S rRNA | U | 2909 | A | 2910 | G | 2912 | * | U | 2891 | A | 2892 | cWW | tSH | cWW | ||
| 9 | IL_1S72_087 | 1S72 | 0.1288 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | C | 2575 | A | 2576 | G | 2578 | * | U | 2557 | G | 2558 | cWW | ntSH | cWW | |
| 10 | IL_3V2F_096 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | ||
| 11 | IL_2QBG_098 | 2QBG | 0.0878 | 1 | B | 23S rRNA | C | 2540 | A | 2541 | G | 2543 | * | U | 2522 | G | 2523 | cWW | ntSH | cWW | ||
| 12 | IL_4IOA_093 | 4IOA | 0.1114 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | C | 2519 | A | 2520 | G | 2522 | * | U | 2501 | G | 2502 | cWW | ntSH | cWW | |
| 13 | IL_4KQY_004 | 4KQY | 0.4188 | 1 | Minor groove platform | A | SAM-I riboswitch | C | 73 | A | 74 | G | 76 | * | C | 49 | G | 50 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*UG | 3 |
| GUA*UC | 1 |
| CUA*UG | 1 |
| GAC*GC | 1 |
| GUG*CC | 1 |
| AUG*CU | 1 |
| GAUU*AC | 1 |
| AACG*UU | 1 |
| UAAG*UA | 1 |
| UG*CAAG | 1 |
| CAAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 5 |
| U* | 4 |
| A* | 1 |
| AU* | 1 |
| AC* | 1 |
| *AA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_46648.6 | Only in the parent motif |
|---|---|---|---|
| IL_46648.5 Compare | IL_4A1B_114, IL_3V2F_096, IL_2QBG_098, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3U5H_117, IL_4IOA_093, IL_4LCK_003, IL_2QWY_005, IL_4A1B_069 | IL_3WBM_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_46648.6 | Only in the child motif |
|---|---|---|---|
| IL_46648.7 Compare | IL_4A1B_114, IL_2QBG_098, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3WBM_004, IL_3U5H_117, IL_4IOA_093, IL_4LCK_003, IL_2QWY_005, IL_4A1B_069 | IL_3V2F_096 | IL_4NVV_095, IL_1VW3_081 |
- Annotations
-
- (8)
- Major groove platform with intercalation (H) (2)
- Other IL (1)
- Single stack bend (1)
- Minor groove platform (1)
- Basepair signature
- cWW-tSH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.59 | Max 1.00
Coloring options: