#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_4A1B_1144A1B0.35361126S RRNAA2897A2898G2900*U2879U2880cWWntSHcWW
2 IL_3U5H_1173U5H0.28801525S rRNAU2909A2910G2912*U2891A2892cWWtSHcWW
3 IL_1VW3_0811VW30.24301A21S ribosomal RNAG2807A2808G2810*U2788C2789cWWcWW
4 IL_1S72_0871S720.14511Major groove platform with intercalation (H)0 LSU rRNAC2575A2576G2578*U2557G2558cWWntSHcWW
5 IL_4NVV_0954NVV0.00001A23S Ribosomal RNAC2552A2553G2555*U2534G2535cWWntSHcWW
6 IL_4IOA_0934IOA0.10081Major groove platform with intercalation (H)X LSU rRNAC2519A2520G2522*U2501G2502cWWntSHcWW
7 IL_2QBG_0982QBG0.10401B23S rRNAC2540A2541G2543*U2522G2523cWWntSHcWW
8 IL_4KQY_0044KQY0.38491Minor groove platformA SAM-I riboswitchC73A74G76*C49G50cWWncSHcWW
9 IL_4LCK_0034LCK0.44411CT-BOX RIBOSWITCH STEM IG28A29U31*A77C78cWWcWW
10 IL_4C7O_0024C7O0.84610Single stack bendESRP RNAA36U37G38*C8U9cWWcWW
11 IL_3U5H_0783U5H0.81810525S rRNAG1776U1777G1778*C1670C1671cWWcWW
12 IL_4A1B_0694A1B0.87050126S RRNAG1643A1644C1645*G1849C1850cWWcWW
13 IL_2QWY_0052QWY0.90110BSAM-II riboswitchC43U44A45*U21G22cWWcWW
14 IL_3WBM_0043WBM0.98570Other ILY+XRNA (25-MER)G2U3A4*U23C24cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAG*UG3
AACG*UU1
UAAG*UA1
GAAG*UC1
UG*CAAG1
CAAG*CG1
GAUU*AC1
AUG*CU1
GUG*CC1
GAC*GC1
CUA*UG1
GUA*UC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*6
U*4
AC*1
*AA1
AU*1
A*1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_46648.7Only in the child motif
IL_46648.8
Compare
IL_1VW3_081, IL_4NVV_095, IL_2QBG_098, IL_4KQY_004, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3WBM_004, IL_4A1B_114, IL_4IOA_093, IL_4LCK_003, IL_3U5H_117, IL_4A1B_069, IL_2QWY_005IL_4CUV_121, IL_4CUV_077
Annotations
  • (9)
  • Major groove platform with intercalation (H) (2)
  • Other IL (1)
  • Single stack bend (1)
  • Minor groove platform (1)
  • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.09 | Avg 0.58 | Max 1.00
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