#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-3
1 IL_1VW3_0261VW30.69380A21S ribosomal RNAC785A786*U839C840G841cWWcWW
2 IL_4IOA_0944IOA0.52580Single bulged A (H)X LSU rRNAC2570G2571*C2580A2581G2582cWWcWW
3 IL_4A1B_0324A1B0.50050126S RRNAA779C780*G800U801U802cWWcWW
4 IL_2QBG_0322QBG0.00000B23S rRNAG862A863*U913G914C915cWWcWW
5 IL_1KXK_0011KXK0.53221Aai5g group II Self-splicing intronG61G62*U8U10C11cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CA*UCG1
CG*CAG1
AC*GUU1
GA*UGC1
GG*UAUC1
Non-Watson-Crick part of the motif
SequenceCounts
*C1
*A1
*U1
*G1
*AU1

Release history

Release1.14
Date2014-04-27
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_46960.1Only in the child motif
IL_09698.1
Compare
IL_1KXK_001, IL_4A1B_032, IL_2QBG_032IL_4IOA_094, IL_1VW3_026IL_2OZB_001, IL_3U5H_046
IL_30323.1
Compare
IL_4IOA_094, IL_1VW3_026IL_1KXK_001, IL_4A1B_032, IL_2QBG_032
Annotations
  • (4)
  • Single bulged A (H) (1)
  • Basepair signature
    cWW-R-cWW
    Heat map statistics
    Min 0.50 | Avg 0.52 | Max 0.87
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