Motif IL_46960.1 Version IL_46960.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_026 | 1VW3 | 0.6938 | 0 | A | 21S ribosomal RNA | C | 785 | A | 786 | * | U | 839 | C | 840 | G | 841 | cWW | cWW | |
2 | IL_4IOA_094 | 4IOA | 0.5258 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW |
3 | IL_4A1B_032 | 4A1B | 0.5005 | 0 | 1 | 26S RRNA | A | 779 | C | 780 | * | G | 800 | U | 801 | U | 802 | cWW | cWW | |
4 | IL_2QBG_032 | 2QBG | 0.0000 | 0 | B | 23S rRNA | G | 862 | A | 863 | * | U | 913 | G | 914 | C | 915 | cWW | cWW | |
5 | IL_1KXK_001 | 1KXK | 0.5322 | 1 | A | ai5g group II Self-splicing intron | G | 61 | G | 62 | * | U | 8 | U | 10 | C | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CA*UCG | 1 |
CG*CAG | 1 |
AC*GUU | 1 |
GA*UGC | 1 |
GG*UAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*C | 1 |
*A | 1 |
*U | 1 |
*G | 1 |
*AU | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_46960.1 | Only in the parent motif |
---|---|---|---|
IL_25300.3 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_4IOA_094, IL_1VW3_026 | IL_2OZB_001, IL_4IOA_024, IL_3U5H_046, IL_3V2F_107 |
IL_13777.1 Compare | IL_4IOA_094 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032, IL_1VW3_026 |
Children motifs
Child motif | Common motif instances | Only in IL_46960.1 | Only in the child motif |
---|---|---|---|
IL_09698.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_4IOA_094, IL_1VW3_026 | IL_2OZB_001, IL_3U5H_046 |
IL_30323.1 Compare | IL_4IOA_094, IL_1VW3_026 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 |
- Annotations
-
- (4)
- Single bulged A (H) (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.50 | Avg 0.52 | Max 0.87
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