Motif IL_46960.1 Version IL_46960.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_026 | 1VW3 | 0.6938 | 0 | A | LSU rRNA | C | 785 | A | 786 | * | U | 839 | C | 840 | G | 841 | cWW | cWW | |
| 2 | IL_4IOA_094 | 4IOA | 0.5258 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW |
| 3 | IL_4A1B_032 | 4A1B | 0.5005 | 0 | 1 | LSU rRNA | A | 779 | C | 780 | * | G | 800 | U | 801 | U | 802 | cWW | cWW | |
| 4 | IL_2QBG_032 | 2QBG | 0.0000 | 0 | B | LSU rRNA | G | 862 | A | 863 | * | U | 913 | G | 914 | C | 915 | cWW | cWW | |
| 5 | IL_1KXK_001 | 1KXK | 0.5322 | 1 | A | Group II catalytic intron | G | 61 | G | 62 | * | U | 8 | U | 10 | C | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UCG | 1 |
| CG*CAG | 1 |
| AC*GUU | 1 |
| GA*UGC | 1 |
| GG*UAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *C | 1 |
| *A | 1 |
| *U | 1 |
| *G | 1 |
| *AU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_46960.1 | Only in the parent motif |
|---|---|---|---|
| IL_25300.3 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_4IOA_094, IL_1VW3_026 | IL_2OZB_001, IL_4IOA_024, IL_3U5H_046, IL_3V2F_107 |
| IL_13777.1 Compare | IL_4IOA_094 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032, IL_1VW3_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_46960.1 | Only in the child motif |
|---|---|---|---|
| IL_09698.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_4IOA_094, IL_1VW3_026 | IL_2OZB_001, IL_3U5H_046 |
| IL_30323.1 Compare | IL_4IOA_094, IL_1VW3_026 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 |
- Annotations
-
- (4)
- Single bulged A (H) (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.50 | Avg 0.52 | Max 0.87
Coloring options: