Motif IL_09698.1 Version IL_09698.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_032 | 4A1B | 0.5397 | 1 | 1 | 26S RRNA | G | 800 | U | 802 | * | A | 779 | C | 780 | cWW | cWW | |
| 2 | IL_2QBG_032 | 2QBG | 0.3743 | 1 | B | 23S rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW | |
| 3 | IL_1KXK_001 | 1KXK | 0.0000 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 4 | IL_2OZB_001 | 2OZB | 0.4859 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 5 | IL_3U5H_046 | 3U5H | 0.5186 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUU*AC | 1 |
| UGC*GA | 1 |
| UAUC*GG | 1 |
| UAG*CG | 1 |
| UCCG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 1 |
| G* | 1 |
| AU* | 1 |
| A* | 1 |
| CC* | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09698.1 | Only in the parent motif |
|---|---|---|---|
| IL_46960.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2OZB_001, IL_3U5H_046 | IL_4IOA_094, IL_1VW3_026 |
| IL_08763.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2AW7_029, IL_1FJG_022 |
Children motifs
| Child motif | Common motif instances | Only in IL_09698.1 | Only in the child motif |
|---|---|---|---|
| IL_98016.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2OZB_001, IL_3U5H_046 | IL_1X8W_004, IL_4IOA_094, IL_1VX2_009, IL_1VW3_026 |
| IL_61513.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_4IOA_067, IL_1VWW_013 |
- Annotations
-
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.35 | Avg 0.46 | Max 0.89
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