Motif IL_25300.3 Version IL_25300.3 of this group appears in releases 1.12 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_046 | 3U5H | 0.5186 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW | |
| 2 | IL_2OZB_001 | 2OZB | 0.4859 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 3 | IL_3V2F_107 | 3V2F | 0.3968 | 1 | B | 5S Ribosomal RNA | C | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW | |
| 4 | IL_1KXK_001 | 1KXK | 0.0000 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
| 5 | IL_2QBG_032 | 2QBG | 0.3743 | 1 | B | 23S rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW | |
| 6 | IL_4A1B_032 | 4A1B | 0.5397 | 1 | 1 | 26S RRNA | G | 800 | U | 802 | * | A | 779 | C | 780 | cWW | cWW | |
| 7 | IL_4IOA_024 | 4IOA | 0.5264 | 1 | Single bulged C (H) | X | LSU rRNA | G | 938 | G | 940 | * | C | 863 | C | 864 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCG*UG | 1 |
| UAG*CG | 1 |
| CAG*CG | 1 |
| UAUC*GG | 1 |
| UGC*GA | 1 |
| GUU*AC | 1 |
| GCG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| CC* | 1 |
| AU* | 1 |
| G* | 1 |
| U* | 1 |
| C* | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_25300.3 | Only in the parent motif |
|---|---|---|---|
| IL_25300.2 Compare | IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046 | IL_4IOA_024 | |
| IL_92109.2 Compare | IL_4IOA_024 | IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046 | IL_3V2F_095, IL_2QBG_097, IL_4A1B_113, IL_4BPP_033, IL_3U5F_033, IL_2QBG_022, IL_3SN2_002, IL_2AW7_029, IL_3V2F_008, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 |
Children motifs
| Child motif | Common motif instances | Only in IL_25300.3 | Only in the child motif |
|---|---|---|---|
| IL_46960.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2OZB_001, IL_4IOA_024, IL_3U5H_046, IL_3V2F_107 | IL_4IOA_094, IL_1VW3_026 |
| IL_08763.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_4IOA_024, IL_2QBG_032 | IL_2AW7_029, IL_1FJG_022 |
| IL_37056.1 Compare | IL_4IOA_024 | IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046 | IL_1S72_045, IL_2QBG_097, IL_2QBG_022, IL_4A1B_113, IL_4BPP_033, IL_4NVV_094, IL_3U5F_033, IL_4OO8_002, IL_3SN2_002, IL_3U5H_031, IL_3U5H_115, IL_1S72_086, IL_3SNP_002, IL_1VW3_080, IL_4IOA_092 |
- Annotations
-
- (5)
- Single bulged A (1)
- Single bulged C (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.20 | Avg 0.48 | Max 0.89
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