Motif IL_47959.1 Version IL_47959.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7LYF_001 | 7LYF | 0.3684 | 1 | A | tRNA | G | 39 | U | 40 | C | 41 | U | 42 | * | A | 90 | G | 91 | U | 93 | C | 94 | cWW | ncwW | ncWH | cWW | |
2 | IL_4WF9_110 | 4WF9 | 0.0000 | 0 | Tandem non-canonical cWW pairs | Y | 5S rRNA | G | 5 | U | 6 | G | 7 | A | 8 | * | U | 107 | G | 108 | C | 109 | C | 110 | cWW | ncWW | cWW | |
3 | IL_8BH9_001 | 8BH9 | 0.4608 | 0 | B | RNA (12-mer) | A | 430 | A | 431 | U | 432 | G | 433 | * | C | 500 | A | 501 | U | 502 | U | 503 | cWW | cWH | cWW | ||
4 | IL_8C3A_461 | 8C3A | 0.6605 | 1 | CM | SSU rRNA | C | 1324 | A | 1326 | C | 1327 | U | 1328 | * | A | 1368 | G | 1369 | A | 1370 | G | 1371 | cWW | ncwW | ncWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUCU*AGUUC | 1 |
GUGA*UGCC | 1 |
AAUG*CAUU | 1 |
CUACU*AGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UC*GUU | 1 |
UG*GC | 1 |
AU*AU | 1 |
UAC*GA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.37 | Avg 0.40 | Max 0.66
Coloring options: