Motif IL_48183.1 Version IL_48183.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VW3_042 | 1VW3 | 0.9205 | 2 | A | 21S ribosomal RNA | U | 1391 | A | 1392 | U | 1393 | U | 1394 | * | A | 1372 | U | 1373 | U | 1374 | A | 1382 | cWW | ncSW | cWW | |||
| 2 | IL_4NVV_011 | 4NVV | 0.2384 | 1 | A | 23S Ribosomal RNA | A | 381 | U | 382 | A | 383 | G | 384 | * | C | 304 | G | 305 | A | 306 | U | 308 | cWW | tWH | tHS | cWW | ||
| 3 | IL_1LNG_002 | 1LNG | 0.2114 | 3 | B | SRP S RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW | ||
| 4 | IL_4NVV_056 | 4NVV | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 1483 | U | 1484 | A | 1485 | G | 1486 | * | C | 1598 | G | 1599 | A | 1600 | G | 1602 | cWW | tWH | tHS | cWW | ||
| 5 | IL_4IOA_055 | 4IOA | 0.2100 | 1 | tSH-tHW (H) | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUU*AUUAAA | 1 |
| CGAAU*AUAG | 1 |
| GUAG*CGAACCC | 1 |
| CUAG*CGAAG | 1 |
| CUAU*AAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UUAA | 1 |
| GAA*UA | 1 |
| UA*GAACC | 1 |
| UA*GAA | 1 |
| UA*AAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48183.1 | Only in the parent motif |
|---|---|---|---|
| IL_21333.2 Compare | IL_4IOA_055, IL_1LNG_002 | IL_1VW3_042, IL_4NVV_011, IL_4NVV_056 | IL_3V2F_054, IL_3V2F_011 |
Children motifs
| Child motif | Common motif instances | Only in IL_48183.1 | Only in the child motif |
|---|---|---|---|
| IL_48183.2 Compare | IL_1LNG_002, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 | IL_1VW3_042 | IL_4CUV_048, IL_1NUV_003 |
| IL_81597.1 Compare | IL_1VW3_042 | IL_1LNG_002, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 | IL_2FQN_003, IL_2OE5_002 |
- Annotations
-
- (4)
- tSH-tHW (H) (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.21 | Avg 0.41 | Max 0.94
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