Motif IL_48183.2 Version IL_48183.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NUV_003 | 1NUV | 1.1781 | 1 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | ||
| 2 | IL_4CUV_048 | 4CUV | 0.6350 | 1 | 1 | 25S RRNA | G | 1013 | U | 1014 | U | 1015 | C | 1017 | G | 1018 | * | U | 1034 | G | 1035 | A | 1036 | C | 1037 | cWW | ncWW | ncBW | cWW | |
| 3 | IL_4NVV_011 | 4NVV | 0.2353 | 0 | A | 23S Ribosomal RNA | C | 304 | G | 305 | A | 306 | A | 307 | U | 308 | * | A | 381 | U | 382 | A | 383 | G | 384 | cWW | tSH | tHW | cWW | |
| 4 | IL_4NVV_056 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 1598 | G | 1599 | A | 1600 | A | 1601 | G | 1602 | * | C | 1483 | U | 1484 | A | 1485 | G | 1486 | cWW | tSH | tHW | cWW | |
| 5 | IL_4IOA_055 | 4IOA | 0.3689 | 0 | tSH-tHW (H) | X | LSU rRNA | A | 1567 | A | 1568 | A | 1569 | C | 1570 | G | 1571 | * | C | 1451 | U | 1452 | A | 1453 | U | 1454 | cWW | tSH | tHW | cWW |
| 6 | IL_1LNG_002 | 1LNG | 0.7229 | 2 | B | SRP S RNA | C | 192 | G | 193 | A | 194 | A | 195 | C | 198 | * | G | 223 | U | 224 | A | 225 | G | 226 | cWW | tSH | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 1 |
| GUUCCG*UGAC | 1 |
| CGAAU*AUAG | 1 |
| CGAAG*CUAG | 1 |
| AAACG*CUAU | 1 |
| CGAACCC*GUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*UA | 2 |
| CGAG*GA | 1 |
| UUCC*GA | 1 |
| AAC*UA | 1 |
| GAACC*UA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48183.2 | Only in the parent motif |
|---|---|---|---|
| IL_48183.1 Compare | IL_1LNG_002, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 | IL_4CUV_048, IL_1NUV_003 | IL_1VW3_042 |
| IL_82133.1 Compare | IL_1NUV_003 | IL_4NVV_011, IL_4CUV_048, IL_4IOA_055, IL_1LNG_002, IL_4NVV_056 | IL_2FQN_003, IL_429D_002, IL_2OE5_002, IL_4NVV_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_48183.2 | Only in the child motif |
|---|---|---|---|
| IL_50787.1 Compare | IL_4IOA_055, IL_1LNG_002 | IL_4CUV_048, IL_1NUV_003, IL_4NVV_011, IL_4NVV_056 | IL_4QCN_053, IL_4QCN_010 |
| IL_77920.1 Compare | IL_1NUV_003 | IL_4NVV_011, IL_4CUV_048, IL_4IOA_055, IL_1LNG_002, IL_4NVV_056 | IL_1NUV_002, IL_429D_002, IL_3J7A_010, IL_3BNQ_002, IL_2QBG_108 |
| IL_72062.1 Compare | IL_4CUV_048 | IL_1LNG_002, IL_1NUV_003, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 | IL_4CUV_105, IL_1VX6_048, IL_2FQN_003, IL_2OE5_002 |
- Annotations
-
- (5)
- tSH-tHW (H) (1)
- Basepair signature
- cWW-tSH-tHW-L-cWW
- Heat map statistics
- Min 0.24 | Avg 0.69 | Max 1.65
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