Motif IL_81597.1 Version IL_81597.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2FQN_003 | 2FQN | 0.0955 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW | |
| 2 | IL_2OE5_002 | 2OE5 | 0.0000 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW | |
| 3 | IL_1VW3_042 | 1VW3 | 0.9101 | 2 | A | 21S ribosomal RNA | A | 1372 | U | 1373 | U | 1374 | A | 1382 | * | U | 1391 | A | 1392 | U | 1393 | U | 1394 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
| AUUAAA*UAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
| UUAA*AU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_81597.1 | Only in the parent motif |
|---|---|---|---|
| IL_82133.1 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1VW3_042 | IL_1NUV_003, IL_429D_002, IL_4NVV_105 |
| IL_48183.1 Compare | IL_1VW3_042 | IL_2FQN_003, IL_2OE5_002 | IL_1LNG_002, IL_4IOA_055, IL_4NVV_011, IL_4NVV_056 |
Children motifs
| Child motif | Common motif instances | Only in IL_81597.1 | Only in the child motif |
|---|---|---|---|
| IL_72062.1 Compare | IL_2FQN_003, IL_2OE5_002 | IL_1VW3_042 | IL_4CUV_105, IL_4CUV_048, IL_1VX6_048 |
| IL_32902.1 Compare | IL_1VW3_042 | IL_2FQN_003, IL_2OE5_002 | IL_1DUQ_001, IL_1CSL_001, IL_2QBG_055, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044, IL_2QBG_046 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cSW-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.43 | Max 0.92
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