Motif IL_21333.2 Version IL_21333.2 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3V2F_011 | 3V2F | 0.1336 | 1 | A | 23S Ribosomal RNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW | |
2 | IL_3V2F_054 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW | |
3 | IL_1LNG_002 | 1LNG | 0.1893 | 3 | B | SRP S RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW | |
4 | IL_4IOA_055 | 4IOA | 0.2282 | 1 | tSH-tHW (H) | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAU*AUAG | 1 |
CUAG*CGAAG | 1 |
GUAG*CGAACCC | 1 |
CUAU*AAACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*UA | 1 |
UA*GAA | 1 |
UA*GAACC | 1 |
UA*AAC | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_21333.2 | Only in the parent motif |
---|---|---|---|
IL_21333.1 Compare | IL_3V2F_054, IL_3V2F_011, IL_1LNG_002 | IL_4IOA_055 | IL_2ZJR_054 |
Children motifs
Child motif | Common motif instances | Only in IL_21333.2 | Only in the child motif |
---|---|---|---|
IL_48183.1 Compare | IL_4IOA_055, IL_1LNG_002 | IL_3V2F_054, IL_3V2F_011 | IL_1VW3_042, IL_4NVV_011, IL_4NVV_056 |
- Annotations
-
- (3)
- tSH-tHW (H) (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.17 | Max 0.29
Coloring options: