#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_3V2F_0113V2F0.13361A23S Ribosomal RNAA357U358A359G360*C280G281A282U284cWWtWHtHScWW
2 IL_3V2F_0543V2F0.00001A23S Ribosomal RNAC1437U1438A1439G1440*C1551G1552A1553G1555cWWtWHtHScWW
3 IL_1LNG_0021LNG0.18933B SRP S RNAG223U224A225G226*C192G193A194C198cWWtWHtHScWW
4 IL_4IOA_0554IOA0.22821tSH-tHW (H)X LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAU*AUAG1
CUAG*CGAAG1
GUAG*CGAACCC1
CUAU*AAACG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*UA1
UA*GAA1
UA*GAACC1
UA*AAC1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_21333.2Only in the parent motif
IL_21333.1
Compare
IL_3V2F_054, IL_3V2F_011, IL_1LNG_002IL_4IOA_055IL_2ZJR_054

Children motifs

Child motifCommon motif instancesOnly in IL_21333.2Only in the child motif
IL_48183.1
Compare
IL_4IOA_055, IL_1LNG_002IL_3V2F_054, IL_3V2F_011IL_1VW3_042, IL_4NVV_011, IL_4NVV_056
Annotations
  • (3)
  • tSH-tHW (H) (1)
  • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.13 | Avg 0.17 | Max 0.29
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