Motif IL_48779.1 Version IL_48779.1 of this group appears in releases 3.89 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3	break		4		5	1-5	2-3	2-4	3-4
1	IL_8DP3_001	8DP3	0.6544	1	Major groove platform	R	C	48	U	49	G	51	*	C	78	G	79	cWW			cWW
2	IL_5J7L_393	5J7L	0.4007	0	Major groove platform	DA	PSU	2457	G	2458	A	2459	*	U	2493	G	2494	cWW		ntSH	cWW
3	IL_5J7L_394	5J7L	0.3637	0	Major groove platform	DA	PSU	2580	G	2581	G	2582	*	C	2507	G	2508	cWW	chH		cWW
4	IL_4V9F_083	4V9F	0.1516	0	Major groove platform	0	U	2492	C	2493	G	2494	*	U	2528	G	2529	cWW	cHH		cWW
5	IL_5TBW_104	5TBW	0.1489	0	Major groove platform	1	U	2826	U	2827	G	2828	*	U	2862	G	2863	cWW			cWW
6	IL_8C3A_112	8C3A	0.1630	0	Major groove platform	1	U	2798	U	2799	G	2800	*	U	2834	G	2835	cWW			cWW
7	IL_7A0S_088	7A0S	0.1054	0	Major groove platform	X	U	2559	G	2560	G	2561	*	C	2486	G	2487	cWW	chH		cWW
8	IL_8VTW_095	8VTW	0.0000	0	Major groove platform	1A	U	2580	G	2581	G	2582	*	C	2507	G	2508	cWW	chH		cWW
9	IL_4WF9_094	4WF9	0.0978	0	Major groove platform	X	U	2607	G	2608	G	2609	*	C	2534	G	2535	cWW	chH		cWW
10	IL_5TBW_107	5TBW	0.1157	0	Major groove platform	1	U	2949	G	2950	G	2951	*	C	2876	G	2877	cWW			cWW
11	IL_4V9F_086	4V9F	0.1086	0	Major groove platform	0	U	2615	G	2616	G	2617	*	C	2542	G	2543	cWW	nchH		cWW
12	IL_8C3A_115	8C3A	0.1436	0	Major groove platform	1	U	2921	G	2922	G	2923	*	C	2848	G	2849	cWW			cWW
13	IL_5XTM_004	5XTM	0.4634	0	Major groove intercalation	D	U	3	A	4	U	5	*	A	44	G	45	cWW			cWW
14	IL_5DCV_005	5DCV	0.5487	0	Major groove intercalation	D	U	3	A	4	U	5	*	A	48	G	49	cWW			cWW
15	IL_1U6B_010	1U6B	0.5830	0	Major groove intercalation	B	U	160	A	161	U	162	*	A	150	G	151	cWW			cWW
16	IL_5VCI_004	5VCI	0.5721	0	Major groove intercalation	B+A	U	2	A	3	U	4	*	A	11	G	12	cWW			cWW
17	IL_4PCJ_004	4PCJ	0.6047	0	Major groove intercalation	A	U	25	A	26	U	27	*	A	11	G	12	cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGG*CG	6
UAU*AG	5
UUG*UG	2
CUAG*CG	1
(PSU)GA*UG	1
(PSU)GG*CG	1
UCG*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	8
A*	5
U*	2
UA*	1
C*	1

Release history

Release	3.89
Date	2024-10-09
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform (12)
Major groove intercalation (5)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.06 | Avg 0.39 | Max 0.77

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